Zingiber officinale (ginger): 122020096
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Entry
122020096 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122020096
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122020096
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122020096
03036 Chromosome and associated proteins [BR:
zof03036
]
122020096
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122020096
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122020096
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122020096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
122020096
NCBI-ProteinID:
XP_042433784
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All DBs
Position
9A:133137980..133145555
Genome browser
AA seq
364 aa
AA seq
DB search
MASSARALEWKFSQVLGERQPGEKVDEIDMISAVEFESRGDYLAIGDHGGRIVLFQKKDR
KDSHPRKVLEHTDYIVTSPPLYCYKTEFQSHEIEFDYLKSLEIGEKINKIRWCANPNSSL
FVLSTNDRTIKLWKVSDHKVKINEMDSNVHVASENALLSERSFLNDQRKPSIPKGYQLEW
IAKRPRNTSTFKESSNVTFDIEDFASSRCRRVYSHAHDYNINSLSINCDLETFLSADDLR
INIWNLEVSNQCFNIIDLRPVDIEDLVEVITSAEFHPACCNLLAYSSSRGFIRLVDMRQS
ALCDQNAKLFQDRETFGSKSFFTEIAASTSDIKFAKDGRHILSRDYMNLKVFWLSFSLVL
WNIG
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtcggcgagggcgttggagtggaagttctctcaggtgctcggagagaggcag
cctggcgagaaggtcgacgagattgacatgatatcggcagttgaatttgagagtagaggt
gactaccttgcaattggagatcatgggggtcgtattgttttgtttcaaaagaaagacagg
aaagattcacatcctagaaaagtgctagagcatacagactatattgttacctcgcctcct
ctctattgctataagacagagttccaaagtcatgaaattgagtttgattacctgaagagt
ttggaaattggagagaagatcaacaaaataagatggtgtgccaaccccaatagttctctg
ttcgttctttctacaaatgacagaacaattaagctatggaaggtctcagaccataaagtt
aagatcaatgaaatggattcaaatgtgcatgtagcctcagaaaatgctcttctatcagag
agaagtttcttgaatgaccaaagaaaaccatctattcccaaaggttaccaattagaatgg
attgctaaaaggccacgaaatacatctacatttaaggaaagctctaatgtgacatttgat
attgaagattttgcttcctcgaggtgtcgtcgggtgtactcccatgctcatgactacaac
attaattctttatcaattaattgtgatttggagacattcttatctgctgatgacctgaga
ataaacatatggaacctcgaagttagtaaccaatgcttcaacatcattgatttgaggcct
gtggacattgaggatctcgtagaggtaataacttcagctgagtttcatccagcatgctgt
aatctcttagcttacagcagctcaagaggtttcatacgactagtagatatgagacaatca
gcactatgtgatcagaatgcaaaactttttcaagatcgtgaaacttttgggtctaagtcc
ttcttcactgagattgctgcttctacctcagacataaagtttgctaaagatgggcgacat
attttaagtcgggactacatgaatttaaaggttttctggttgtctttttctttggtactt
tggaatattggttga
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