Zingiber officinale (ginger): 122020101
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Entry
122020101 CDS
T08725
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122020101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122020101
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122020101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122020101
NCBI-ProteinID:
XP_042433796
LinkDB
All DBs
Position
9A:35209624..35215268
Genome browser
AA seq
472 aa
AA seq
DB search
MGMDQGKLFIGGISWDTNEDGLREHFGQFGEVVEAVIMKDRNTGRARGFGFVVFTDPAVA
ERVVMEKHTIDGRVVDVKKAVPRDDQQVLNRSSNSIHGSLSPGRTKKIFVGGLPSTITEN
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDTEEAVDKVLFNTFHDLNGKKVEVKR
AVPKELSPGPSTRLQTVGFNYGVNRGNNFLSGHAQGYNPSSISDYGMRMDSRLGALSTGR
NGLPSLGPAFGMGLDYNRTLNSGIVGNTDVGNILNYGRVALNSFYGGGNSSRYDGPIPYS
GLNRNTSTFRSSMAQTLLGNTGLNYSVNSSTASASMTSGSGGLGSFSNSSLNWGGSVPNS
LQFGGSRSGYGSSNVSYIGTDNLALGGNSFERRVSPPVANTNLTSLNSGYEVSFEDLYGG
NLVYGDPTWRPSLSDVDDTGSFSYRLGNSDADSGKEFVDYIGGYDVNNRQTD
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgggcatggatcagggcaagctcttcatcggcggaatctcgtgggacaccaatgaggat
ggtctccgggagcacttcggccagttcggggaggtggtggaggccgtcatcatgaaggat
cggaacacgggccgtgcccgcggcttcggtttcgtcgtgttcactgaccctgccgttgcc
gaaagagtcgtgatggaaaaacacacaattgatggtcgagtggtggatgtcaagaaagct
gttcctagggacgaccaacaagttcttaatagaagcagcaacagcatccatggttctctt
agccctggtcgcacaaagaagatatttgtggggggcttgccatctaccataacagaaaat
gactttaagaagtattttgatcaatttgggacgatcacagatgttgtggtgatgtacgat
cacaatacacagcgacctaggggatttggcttcatcacctatgatactgaggaagctgtg
gataaggtattgttcaacactttccatgatctgaatggtaagaaggtagaggtcaagagg
gctgtgcctaaagagctttcgcccggacccagcacacgattgcagaccgttggatttaac
tacggtgtgaatcgaggaaataattttcttagtgggcatgcacaggggtataatccaagc
tcaataagtgactatggtatgaggatggatagcagattgggagcactatccactgggagg
aatgggctcccttcacttggtcctgcttttggaatgggactcgattacaatcgaactttg
aactcaggaattgtagggaatacagatgtaggtaacattcttaattatggacgggtggct
ttgaactccttttacggtggtgggaattcaagtaggtatgacggtcccattccatatagt
ggtttgaaccgaaatactagcacatttcgtagttcaatggctcaaactttattgggaaac
acaggcctcaactattctgtaaattcttcaactgcaagtgcctccatgacctctgggagt
gggggccttggtagctttagcaacagtagcttgaactggggtggttctgttcctaactca
ttgcaatttggggggagccgctcaggctatggcagtagcaatgtgagttatattggtact
gataatcttgcattgggtggcaacagttttgaaagaagagtctctcctccggtggccaac
actaatcttacctctttgaactctggatatgaagtaagctttgaagatttatatggtgga
aatttggtttatggggaccctacttggcgaccttcattgtcagatgttgatgatactggt
tcattcagctataggcttggcaattcggatgctgattcaggcaaagaatttgtagattat
ataggtggttatgatgttaacaatagacaaacagattga
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