Zingiber officinale (ginger): 122020147
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Entry
122020147 CDS
T08725
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122020147
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122020147
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
122020147
Protein phosphatases and associated proteins [BR:
zof01009
]
HAD phosphatases
Fcp/Scp phosphatases
122020147
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
122020147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_CPL3
NIF
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
122020147
NCBI-ProteinID:
XP_042433863
LinkDB
All DBs
Position
9A:complement(109948592..109954208)
Genome browser
AA seq
1221 aa
AA seq
DB search
MLAAGSARFFLNPSEKKSLDNMARDRPRGGRALDGETSDDDSSESVEEISAEDFKQEGRA
GRSRVWMGYPMPKNYGPSLYNFAWAQAVQDKPLGLDLKPMSAGDLTGNINAKGKPKEEEA
YDVIMEDSIQEGDVGMELEEGEIELGSEPLVVDETTEMSSNEPENKTEKKESDGEELQDI
DEFDKRISLILEELDMITVEEAEKSFEGVCLRLRKSFEDLKPMFTGIENSDTVLHVLVQQ
AFVAIQTTYSALNSVTMQKKDQNKQLLMRLLIHVKNQYSVIFNLEQVWEIDNLVNSLVFE
DNKKEKEEHADINMNILTNIVNGPVVSSHGSSVLDKTCLVRETLDLPKLVLPTHTNNRVD
FSPLLDLHADYDEDSLPSPTREDLPKFPIPKPIGFGMAPPVFSQPITAMSEGGEDGMLHP
YVTDALKAVSSYQMKFGRSSILSTDRLPSPTPSEDGGNEDDSTEEVSSSIVFCNPKTAHA
TAQFRMLKSRSSAQCINGSNSNTCPPVEHVNPASKPTLKSALKRRDPRIKFVNNEVKSLP
EERRVTEPNPLDSDPMGETRNIKKHKTDESVARDHTVKKQRKELATSRGMRMASGSGWPE
DKNVIFQPSGRIKVNEKIQVDDRKMGTAAAVPDKKQIFDSNFIELNGLQSIPKSNPTPTI
SLPSLLKAVNPTILMHLHPLEQQRPAGENQKKNTVSTIESANVLSDSGLPGTVASVNYAP
LKSKESGLKHPGISPIASQIASLSTQTDAARIHMKPRDPRRILHENMLQKNDSVVYQQSK
RNASVSDPQFSLVHLSAPLQLTKNLVLPRSQVVATSQVLPPSINQPVPSQVNQVTAEAAS
GELNDSKATSRPVSETGEKGSKQSTNPWGDVDHLLDGYNEEQKATIQKERSRRIAEQNKM
FAARKLCLVLDLDHTLLNSAKFVEVDPVHEDKLRRKEEQDKEMPQRHLYRFQHMGMWTKL
RPGVWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPTGTLFAGRVISKGDDADTFDGDE
RVPKSKDLDGVLGMESAVVIIDDSVRVWPLNKLNLIVVERYTYFPSSRRQFGLLGPSLLE
IDHDERPEDGTLASSSAVIERIHQNFFSHNSLKDVDVRNILATEQHKILAGCRIVFSRVF
PVGEVNPHRHPLWQTAEQFGAVCTNQIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWV
EASALLYRRVSEQDFAVKTLT
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccgccggatccgctcgattcttcctgaatcctagcgagaagaaatccctagat
aatatggcgagggatcgcccacgcgggggccgtgctttggatggggagacgtctgatgat
gactcttcggagtcggtggaggagatatcggcagaagatttcaagcaggaaggaagagct
gggagatctagggtttggatgggctacccgatgccgaagaactatggccccagtctgtat
aacttcgcctgggcgcaggctgtgcaggataagcctttgggattagatttgaagccgatg
agtgcaggcgatctcactggcaacatcaatgccaagggtaaaccgaaagaggaggaagct
tacgatgtgattatggaagatagcatccaggagggcgacgttggaatggagttggaggaa
ggggagattgagcttgggtctgagccgttggtggttgatgaaactactgagatgtcttcg
aatgaacctgagaataagacagaaaagaaggaatcagatggagaagagttacaagatatt
gatgaatttgacaagcgtataagcttaatcctggaagagctcgatatgattactgtggaa
gaggcagagaaatcctttgaaggtgtatgtttgaggttgcgcaagtcttttgaagacttg
aagcctatgtttactggcatagagaattcagatacagttctgcatgttctagtccaacag
gcttttgtggcaatacaaacaacttattctgcactcaattcagttacaatgcagaagaag
gaccagaataaacaactgctcatgaggttgctgattcacgtaaagaaccagtattctgtc
atttttaatctagaacaagtttgggagattgataatctggtcaattcacttgtttttgag
gataataaaaaagagaaagaggagcatgccgatatcaatatgaatatccttacaaatatt
gttaacggtcctgttgtctcgtctcatggttcaagtgttttggacaaaacctgtttggtt
cgagaaacacttgatttgccaaagttggttttacctacacacaccaacaatagggtagac
tttagtccgctgttggatcttcatgcagattatgatgaagatagtcttccttcacctaca
agagaggatttaccaaaatttcctataccaaagcccattggttttggaatggcgccacct
gtgttttctcagccaataactgcgatgagtgaaggaggggaagatggtatgttacatcca
tatgtaactgatgcactaaaggctgtgtcgtcctaccagatgaaatttggcaggagttcc
attttgtcaactgatcgtcttccaagtccaactccctcagaagatggtgggaacgaagat
gattccactgaggaagtatccagttctatagttttttgtaatcccaaaactgctcatgca
acagctcaatttcggatgctcaaatctaggagcagtgctcaatgcataaatggttcaaat
agcaacacatgtcctccagttgagcacgttaatcctgcatcaaaacctactttaaagtct
gcattaaagaggagagacccaaggattaagtttgtgaataatgaagtgaaaagtcttcct
gaggagagaagagttacagaacccaatccactcgacagtgatccaatgggagagactagg
aatattaaaaagcataagacagatgagtctgtagctagggaccatacagtgaaaaaacaa
agaaaggagcttgcaacttcgagaggaatgcggatggcatcagggagtggatggccagag
gacaagaatgttatctttcaacccagtggcaggatcaaagtgaatgaaaaaattcaggtt
gatgatagaaaaatgggaactgcagcagcagttcctgataaaaaacaaatatttgatagt
aattttattgagttaaatggtcttcaatcaattcctaaaagtaatcccactcccactatt
tctttgccttcgttgctgaaagctgtgaacccaacaattcttatgcatctacatccactg
gaacagcagcgaccagcaggagagaatcaaaagaaaaatactgtttcaacaattgagagt
gcaaatgttttgagtgatagtggactgccaggaacagtagcttcagtaaattatgctcca
ctcaagtcaaaagaatctggtcttaagcatccaggaatatctccaatcgcttcacagatt
gcttctttgagcactcaaacagatgctgcaaggattcacatgaaacctcgtgatccccgc
cgtattctccatgaaaatatgttacagaagaatgatagtgttgtatatcaacaaagtaaa
agaaatgcatctgtttctgatccccagttcagtttggtacatctgtctgctcctctgcag
ttaaccaagaaccttgttttgcctagatcccaagtagttgcaacttcgcaagtacttccg
cccagtatcaaccagccagttccaagtcaagttaatcaggtgaccgcggaggcagcttca
ggagagttgaatgattcaaaagccacctctcgtccagtttctgaaacaggcgagaaaggt
agtaaacaatcaaccaatccttggggagatgttgaccatttacttgatggctataacgaa
gaacaaaaagcaaccatccaaaaagagagatcaaggaggatagcagaacagaataaaatg
tttgctgctaggaagctttgtcttgtccttgatttggatcatacacttcttaattctgca
aagtttgtagaagtagatccagttcatgaagataaattaaggaggaaagaagagcaagac
aaggagatgccacaacgacatctttatcgctttcaacatatgggaatgtggacaaaattg
agaccaggcgtctggaattttctggaaaaggctagtaagctctacgaactgcatttatat
accatgggaaacaaactgtatgctacagagatggcaaaggtgctagatccaacaggaaca
ttgtttgctggccgggtcatctctaagggagatgatgctgatacttttgatggcgacgaa
agggttccgaaaagcaaggatctagatggtgttttgggtatggaatcggctgtggtgatt
attgatgactcggttagagtatggccacttaacaaactcaatttgattgttgtggagaga
tatacttactttcctagtagtaggcgccaatttggacttcttggaccttctcttctcgag
attgatcatgatgagaggccagaggatggtacacttgcttcttcatcggcggtcattgag
cgtattcatcagaatttcttctcacataactccttaaaagatgtagatgttcgaaatata
ctagcaactgagcaacataaaattcttgcagggtgtcgtatagtttttagtcgggttttc
ccagttggggaagtcaatcctcataggcatcctctatggcagacagccgaacagtttggt
gccgtctgcactaaccaaattgatgaacaggttactcatgttgtagccaattctcttgga
accgacaaggtgaattgggctctatctactggaagatttgttgttcatcctggctgggtg
gaagcttcagctcttctctatcgccgagttagcgagcaggatttcgctgttaaaactcta
acatga
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