Zingiber officinale (ginger): 122020174
Help
Entry
122020174 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7 isoform X1
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122020174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122020174
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122020174
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122020174
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122020174
NCBI-ProteinID:
XP_042433900
LinkDB
All DBs
Position
9A:complement(23553610..23555808)
Genome browser
AA seq
295 aa
AA seq
DB search
MVRFEVNPPIRDFIPIDAGAMSAILPKTETVQIREVWADNLEAEFALIREVVDDFPYVAM
DTEFPGIVCRPLGTFRSSADFNYATLKANVDVLKLIQLGLTFSDERGNLPTCGSSRGCVW
QFNFREFDLQCDVFSTDSIELLRQSGIDFERNSEEGIDAQRFGELLMSSGIVLNDSVHWV
TFHSGYDFGYLLKVLTCQHLPDTQVGFFNLIRIYFPTVYDVKHLMKFCNSLHGGLNKLAE
LLELERVGICHQAGSDSLLTSCAFRKLKESFFSGSTERYAGVLYGLGPENGQTAH
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggttcggttcgaggtcaatcccccgattagggatttcattccgattgacgccggtgcg
atgtcggcgatccttccgaagacggagactgtccagatccgcgaggtgtgggccgataat
ctcgaggcagagttcgccctaatccgcgaggtggtggatgacttcccctacgtcgccatg
gacaccgagttccccggcatcgtctgccgccccctcggcaccttccgcagcagtgccgac
ttcaactacgccactctcaaggccaacgtcgacgtgctcaagctcatccagctcggtctc
accttctccgacgaacgcggcaacctcccgacctgcggcagcagccgtggctgcgtctgg
cagttcaatttccgcgagttcgacttgcagtgcgacgtcttctctaccgactccatcgaa
ctcctccggcagagcggcatcgacttcgagaggaacagcgaggaagggatcgacgcccag
cggtttggtgagctcctcatgtcgtccgggatcgtgcttaatgactccgttcattgggtc
acattccacagcggctatgatttcggttaccttctcaaggtgctcacttgccagcacctc
cccgacacccaagtgggcttcttcaatttgatcaggatctacttcccaaccgtgtacgat
gtcaaacacctcatgaagttctgcaacagcctccatgggggcctaaataagcttgccgaa
ttgcttgaattagaaagagttggaatatgccaccaggccggttctgatagcctgctaact
tcttgcgctttcaggaaattgaaggagtcattttttagtggctctactgagaggtatgca
ggtgtgttgtatgggctgggtcctgagaatggacaaaccgctcattga
DBGET
integrated database retrieval system
