Zingiber officinale (ginger): 122020182
Help
Entry
122020182 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18-like
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122020182
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122020182
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
122020182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Ras_bdg_2
Motif
Other DBs
NCBI-GeneID:
122020182
NCBI-ProteinID:
XP_042433914
LinkDB
All DBs
Position
9A:complement(11770020..11778386)
Genome browser
AA seq
649 aa
AA seq
DB search
MAEAEHEALNRALTTTRFSDINPSLSMPVLDALALAGFQFCTPVQAATIPLLCSHKDVSV
DAATGSGKTLAFVVPLVEILRRCTSVPKPHQVLGMIISPTRELSSQIYHVAQPFFSTIKN
AKCALLVGGLDIRADKEKIETEGANILVGTPGKLCDVMERLDVLDFRSLEILILDEADRL
LEMGFQKQLTYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVKVEVRVQVKAQGEAS
TQEVASSKTPLGLHIEYMVCEAQKKSTYLVDFLARNMSKKMIVYFMTCACVDYWGVVLPQ
LTELKGCPIISLHGRMKQTAREKALASFTDLSNGILLCTDVAARGLDIPGVDWILQYDPP
QDPNVFIHRVGRTARIGRQGSAIAFLLPKEDDYVEFLQLRRVPLKERTCSDTEFDIVPQI
RAAAKEDRDVMEKGIKAFVSYIRAYKEHHCSYIFRWKDLEIGKLAMGYGLLQIPAMPEVK
HHSLSIEGFSPIHDFDLTQIKYKNKAREKQRQKILLSKQEEEPKQKQVKKKPESAATVMK
KKTGKKRRAIQTKEDAEELDQEYRLLKKLKRGLIDDDEFDKLTGFGEVEEERPSEIDSKP
SGAEVRAASKSSRMKTNQRANARRPGRSNNNNAKKSSTLRSKSKKVRRV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggctgagcatgaggctttgaatcgggcgcttacaactactcgtttctcggat
ataaacccttctctctccatgcccgtcctcgatgctctagccctcgctggatttcaattt
tgcacgccggttcaggccgctaccatccccttgctctgcagccacaaggacgtttctgtt
gacgccgcaactggttcaggaaaaaccctcgccttcgttgtacctttagtcgagatccta
cgacgatgcacctctgtccctaagcctcatcaggttcttgggatgatcatttctccaaca
agggagctatcatcacaaatataccatgttgcacagcctttcttctcaacaattaagaat
gccaagtgtgctcttcttgttgggggtctagacataagggcagataaagagaaaattgaa
actgaaggcgccaacatcttagtaggtactccagggaagctgtgtgatgtaatggagcgc
ttggatgtactagatttccgaagccttgagatcctgattctagacgaggcagacagactt
ttagaaatgggatttcaaaagcaactcacttatataatttctcgtttaccaaagctccga
agaactggacttttctctgctacacagacagaggctgttgaagagctctcaaaggcagga
ttaaggaatcctgtgaaggttgaagttcgagtgcaagtcaaagcacaaggtgaagcgtca
acacaagaagtagcttcctcaaaaacacctttagggctacatattgagtacatggtatgt
gaagcacagaagaagtccacctaccttgttgatttcttggcaagaaacatgtcgaaaaag
atgatagtatacttcatgacatgtgcttgtgttgattattggggtgttgttcttcctcaa
cttactgaactgaaaggttgtcccataatttcacttcatggaagaatgaagcagacagca
agggagaaagcattggcatcttttacagatctttcaaatggtattcttctatgcactgat
gtagcagcaagggggttggatattccaggtgttgactggattttacagtatgatccaccg
caggatcccaatgtatttatacatagggttggccggactgctcgtataggcagacaagga
agtgcaattgctttccttttaccaaaggaggatgattatgtagaattcctgcaactgaga
agagtccctcttaaagagagaacatgctcagatactgaattcgacattgttcctcagatc
agagctgcagctaaagaagaccgcgatgtgatggagaaggggatcaaagcatttgtgtca
tacattcgtgcatataaagaacatcactgttcttatatattcaggtggaaagatctggag
attgggaaactggctatgggatatggtttgctgcagatcccagcaatgccagaagtgaag
catcactctctatcgatcgagggtttctcgcccatccatgattttgatttgacacagatc
aagtacaagaataaagccagagagaagcaaagacagaagattttgctaagcaagcaagaa
gaagagcctaaacaaaaacaggtgaagaagaaaccggagtctgctgccactgttatgaaa
aagaaaacaggcaaaaagcgccgcgccattcagaccaaagaggatgcagaggagttggat
caagagtaccgtttattgaagaagctaaagcggggattgatcgatgacgatgaattcgat
aagcttactggctttggggaagttgaggaagaaaggccttctgaaattgattcgaaaccc
tctggtgctgaagttcgtgctgcttctaaaagcagcagaatgaaaacaaatcaaagagcg
aatgcaagaaggccagggagatcgaacaacaataatgctaaaaagagtagtacactgaga
tcgaagtcaaagaaagttagaagggtgtga
DBGET
integrated database retrieval system
