Zingiber officinale (ginger): 122020310
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Entry
122020310 CDS
T08725
Name
(RefSeq) serine/arginine-rich splicing factor SR34A-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122020310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122020310
Spliceosome [BR:
zof03041
]
Common components
Common spliceosomal components
SR proteins
122020310
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
122020310
NCBI-ProteinID:
XP_042434117
LinkDB
All DBs
Position
9A:16667113..16673787
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AA seq
276 aa
AA seq
DB search
MRRRFCVLNSSLSFEETLKGHTFTAVIMSARLSHTIYVGNLPIDIRESEVEDLFYKYGRI
VEVQLKNPPRPPGYCFVEFESSRDAEDAVRGRDGYDFDGHRLRVELAHGGRGQSFPTRRG
TRHGGGGNKQGVSHRSDYRVIVRGLPSSASWQDLKDHMRKAGDVCFAQVFRDGDGVMGLV
DYTNSEDMKYAIRKLDDTEFKNPWSRSYIRVKSYERSKSRSPGSSRSPSRSRGPRRSRSK
SNDRSRSRSPSKSASPRPKSAFPARLSRSRSRSQSG
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgtcgattttgtgttttaaactcgtcattatcctttgaagaaaccttgaaaggg
catacatttacagcggtgatcatgagtgctcgactaagtcatacaatttatgtgggcaac
ctccctatagatatccgggaatcagaagttgaagatttgttttacaagtatggtcgcatt
gtggaagttcaattgaagaatccacctcgacctcctggttattgttttgttgagtttgaa
agttcacgggatgctgaagatgcagtgaggggtcgtgatggctatgactttgatggtcat
cgtctcagggttgagttagcccatggtggtcgagggcagtcatttccaactagacgaggt
actaggcatggaggcgggggaaacaaacaaggagtgtcacatcgttcagattatcgagtg
attgtccgaggacttccttcttcagcttcatggcaggatcttaaggatcacatgaggaag
gccggagatgtatgttttgcacaagttttccgtgatggtgatggtgttatgggtttggtt
gattatacaaattctgaagacatgaaatatgctattcgtaaacttgatgacaccgagttt
aaaaatccttggtcaagatcctacattcgggtcaaaagctacgagcgaagtaagtcgagg
agcccaggctcaagccggagccccagtagaagtagaggaccacggaggagcaggagcaaa
tcaaatgaccgatcacgttcaagatcaccatcaaagtctgcttctccacgacctaaatct
gcgtttccagccagactgtcaagatcaagatctaggtctcaatctgggtga
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