Zingiber officinale (ginger): 122020386
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Entry
122020386 CDS
T08725
Name
(RefSeq) chaperonin CPN60-2, mitochondrial-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122020386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122020386
03110 Chaperones and folding catalysts [BR:
zof03110
]
122020386
03029 Mitochondrial biogenesis [BR:
zof03029
]
122020386
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
122020386
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
122020386
Messenger RNA biogenesis [BR:
zof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
122020386
Chaperones and folding catalysts [BR:
zof03110
]
Heat shock proteins
HSP60 / Chaperonin
122020386
Mitochondrial biogenesis [BR:
zof03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
122020386
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122020386
Exosomal proteins of other body fluids (saliva and urine)
122020386
Exosomal proteins of breast cancer cells
122020386
Exosomal proteins of colorectal cancer cells
122020386
Exosomal proteins of bladder cancer cells
122020386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
SHOCT-like_DUF2089-C
Flavoprotein
Motif
Other DBs
NCBI-GeneID:
122020386
NCBI-ProteinID:
XP_042434234
LinkDB
All DBs
Position
9A:21865510..21872577
Genome browser
AA seq
578 aa
AA seq
DB search
MYRAVASLASKARVARGGGSSSRQIGSRLGWSRNYAAKDIRFGVEARALMLKGVEDLADA
VKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFNDKIKNMGASLVKQVANATNDVAG
DGTTCATILTRAIFAEGCKSVAAGMNAMDLRRGITMAVDAVVTYLKSRARRISTSEEIAQ
VGTISANGEREIGELIAKAMEKVGKEGVITVSDGKTLLNELEVVEGMKLERGYISPYFIT
DQKNQKCELDDPLILIHEKKISSINAIVKVLELALKRQRPLLIVAEDVESDALATLILNK
LRAGIKVCAIKAPGFGENRKSNLQDLATLTGGSLITEELGLNLEKVELDLLGTCKKVTIS
KDDSVILDGAGDKKAIEERCEQIRSAIELSTSDYDTEKLQERLAKLSGGVAVLKIGGASE
AEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELDKLETANFDQKIGVQIIQNA
LKAPVYTIASNAGVEGAVVVGKLLEQNDLDLGYDAAKGEYVDMVKSGIIDPLKVIRTALV
DAASVSSLMTTTEAVVVELPKDEKDAPAMGGGMGGMDF
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgcgccgtcgcctccctcgcctccaaagctcgggttgcccgtggcggcggaagc
agcagcagacagattggaagtagacttggttggagcagaaactatgccgctaaggatata
aggttcggagttgaggcccgtgctttgatgctcaagggtgtggaagatctggcggatgct
gtgaaggtgactatgggcccaaagggtcgtaatgttgttattgagcaaagctatggcgca
cccaaagttacaaaagacggcgtaactgtagcaaagagcattgagtttaatgataaaata
aagaatatgggtgccagccttgtgaaacaagtcgccaatgcaaccaatgacgttgctggt
gatggcacaacttgtgctaccatccttacgcgtgcaatatttgctgaaggatgtaagtca
gtggctgctggaatgaatgcaatggatttgaggcgtggcatcacaatggctgttgatgct
gttgtaacttacttgaaaagcagagctagaaggattagcacttctgaggagatagctcag
gttggtacaatatcagccaatggagaaagggagattggtgagctaattgcaaaagcaatg
gagaaagtcggcaaggaaggagtaatcactgtctcagatggaaaaactctgttaaatgaa
ctggaagttgttgaagggatgaaacttgaacgcggctacatttcaccttatttcattact
gaccaaaaaaaccaaaaatgtgaactcgatgatcctctaattttgatacatgagaagaaa
atctcaagtattaatgcaattgtcaaggtgttagagttggcattgaagagacagagacct
ttgctaattgttgctgaagatgtagaaagtgatgcattagcaactttgattctaaataag
ctacgtgctggaattaaggtttgtgctattaaggcacctggttttggggagaacaggaaa
tcgaatctgcaagatcttgctacactcactgggggatctctcataacagaagaactaggc
ttgaaccttgagaaagtggaactcgacttgcttggtacatgcaaaaaggtaacaatctca
aaagatgacagtgtgattcttgatggagctggggacaaaaaggctattgaagagagatgt
gagcagatacgatctgctattgaattgagcacatcagattatgacacagagaaattgcaa
gagaggttggcaaaactttccggtggagttgctgtcctcaagattggaggagctagcgaa
gcagaagttggtgagaaaaaggacagggtcacagatgccttaaatgcaacaaaagctgct
gttgaagagggcattgtaccaggtggtggtgttgcccttctttatgcagccaaggagctg
gataagttggagactgctaactttgatcaaaagattggtgtccagataattcagaatgcc
ttgaaggcaccagtatatacaattgcatccaatgctggagtagagggggcagttgtcgtc
ggcaagctcttggaacaaaatgaccttgaccttggttatgatgcagccaaaggtgagtat
gtcgacatggtgaaatccggtattatcgatccattgaaggtcattagaactgcattggta
gatgcagcgagtgtctcctctttgatgaccaccactgaggccgtggtggtggaactgccc
aaggacgagaaggatgctcctgcgatgggcggcggcatgggcggaatggacttctaa
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