Zingiber officinale (ginger): 122020388
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Entry
122020388 CDS
T08725
Name
(RefSeq) uncharacterized protein LOC122020388 isoform X1
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122020388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122020388
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122020388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Utp12
Beta-prop_TEP1_2nd
WDR90_beta-prop_4th
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_1st
PQQ
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
PQQ_2
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
122020388
NCBI-ProteinID:
XP_042434236
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All DBs
Position
9A:94185376..94192464
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AA seq
652 aa
AA seq
DB search
MAINFHDVRGLLAAFSPSSEFFAISSGDGRIKIWDTIKGQLQTEFSDLLPSDASSLLSQP
KSGHLSLDYTCMKWVPLERKKKRKSGSSLLVLGTGNGDVLALDVSAGQLKWKISDCHPGG
VTVVCFSELHRSVYTTGVDGMVCEIDAAKGSFIGKFRAFTKSISSMAVSADGKILATASG
QLKTFGCSDNKKLQKFSGHPVAVRCMIFSQDGQYIMTSGVGERHIAIWKVGGDKKQSASC
ILSMEHPAVFLDGKAVQKDEKFGEGFSVLAISEVGMGYFWYGSNLEELRHSQPTKISVFM
EPKINDLGIYGAKLLDSPKAASGHVFLAYGSLVKPSFQKLLVHYGTDIKLDDSKGGILLP
IDSFPHPQKPQMRSMKGTVTALDRTNAEHAVLPIPKLHTHDKKRKHSMAKLTADIEDAIT
DPIIKEVKKQSTDRRVVLQRMEEDTICLEDKLRELGFISDNDCSKEASDPSSPTSTSLDL
YSGDMISSDAKISSRKIRLHVSSMNSADAYNFLEDLISAWRKRTPGLKNVLQWIYFILLM
HGQFVASKDSSAGMLDALQKASKNMIRLRCASINHLLKLSGRIRLIMTQIDKIGKKVSMD
EHLGEGGKMLSDDDEDVGFDDENNEDEEIDEMLYGEDESNSDDHDDHELGQT
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggctatcaactttcatgacgtcagaggtctcctagcggccttcagcccctcttcagag
ttcttcgccatttcttcgggtgacggtcgtattaagatatgggacaccataaaaggtcag
ttgcagacggagttttcagatttattgccttctgatgcatcaagccttttgtctcagcct
aaaagtgggcacctttcacttgactatacctgcatgaaatgggttccacttgaaagaaag
aagaaaagaaaatcaggtagctccctcttggtgttgggaactgggaacggtgatgttcta
gcgctggatgtatctgctggacaattgaagtggaaaattagtgactgtcatcctgggggt
gtgactgttgtttgtttttctgagcttcatcgatctgtgtacacaacgggtgttgatggt
atggtttgtgagattgatgcagcgaaggggagcttcataggaaaatttagggcatttact
aaatcaatttcttctatggctgtttctgctgatggtaaaatattggccactgcatctgga
cagctgaagacttttggttgttctgataacaagaaactacaaaagttttctggacaccca
gtggctgttcggtgcatgattttcagtcaagatgggcaatatatcatgacatctggagtt
ggtgagagacatattgccatttggaaagtaggcggagacaaaaagcaatctgctagttgt
attctctcaatggagcatccagctgtttttctggacggtaaagctgtacaaaaggatgaa
aagtttggagaggggttttctgttctggccatttctgaagttggcatgggttatttttgg
tatggaagtaaccttgaagaattgcgccatagtcagcccacaaagatctcagtttttatg
gagccaaagataaatgatttgggcatatatggagcaaaacttctagattcacctaaagct
gcttcaggacatgttttccttgcttatggttcactagttaagccttcatttcagaaactg
ttggtacattatggaacagacattaaattagatgactccaaaggtggtattcttttgcca
attgacagctttcctcatcctcagaagccacaaatgaggagcatgaaaggaacggttact
gcactagatcgaacaaatgcagaacatgctgttcttccaattccaaagctacatacgcat
gataagaagagaaagcattctatggcaaaattgactgcagatattgaggatgctataact
gatccaataatcaaggaagtgaaaaaacaatcaacagatagaagagttgtcctgcaaaga
atggaggaagatacaatatgcttagaagataagctgagagaactgggatttatcagtgac
aatgattgttccaaggaagcaagtgatccaagtagtcctactagtacttctctagatctc
tacagtggcgacatgatatcaagtgatgcaaaaatttcttcaaggaagataaggctgcac
gtctcgtccatgaactctgctgatgcttacaatttccttgaagaccttatttctgcttgg
aggaaaagaacacctggtttaaagaatgttcttcaatggatatattttattctgctaatg
cacggtcagtttgttgcaagtaaagattcatcagctggaatgctagatgctctgcaaaag
gcatctaaaaatatgataaggttaagatgtgcgtccatcaatcatttactgaagctatct
ggtagaattcgactaatcatgactcagatcgataaaattggtaagaaagtatcaatggat
gagcacctcggcgaaggtggcaaaatgctgagcgacgatgatgaagatgttggtttcgat
gatgaaaacaatgaagacgaagagattgatgagatgttgtatggagaagatgagagcaac
agcgatgaccatgatgaccatgaactgggtcagacatga
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