Zingiber officinale (ginger): 122020392
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Entry
122020392 CDS
T08725
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122020392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122020392
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122020392
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
MMR_HSR1
GTP_EFTU_D2
Zn_ribbon_RanBP
GTP_EFTU_D4
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
122020392
NCBI-ProteinID:
XP_042434244
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Position
9A:460836..468316
Genome browser
AA seq
657 aa
AA seq
DB search
MPRKVSYGLDYDDDYGTYDDYDYEHEVKVDGYDDYEDNVTSKPGKDGSKHGIWQCPICSY
DNDESSFCCDICGAIYVYSSTHGKQKVNPATKDTGASAISKSHAQIYVAPRTNNLVDEFK
SRKPNLYEQGRPEYRRGESNSKGKEAQVLSSDNEMLVPSVHGSKVSSDCESESSHSRENM
NLTAPLSSNLNQLKLGKHPIRNKKVNSETKYQPEEWMLMEKEPEILKQLNLAIVGHVDSG
KSTLSGRLLHLLGKVSKKEMHKYEKEAKEKGKGSFAYAWAMDESTEERERGVTMTVAVAY
FDSKKYHVVLLDSPGHKDFVPNMISGAAQADAAVLVVDASTGSFEAGMDGYGIGQTREHA
QLVRSFGVEQIIVAVNKMDVVGYSKERFDFIKSQLGAFLRSCGFKDSSIIWVPLSAVENQ
NLVTTSADVRLSSWCQGVCLLDAIDSLQTPLRDVSKSLILPICDVVKTSMGQVAACGKLE
TGAIRNGSKVLVMPIGALAAVRSIERDSISCNLARAGDHIAVTLQAIETGHVLAGGVLCH
PDYPVQVATCLELKILVLDIPTPILVGSQVEFHIHHAKVAGRVSKMVALLDQKTGKVSKT
APRILKGKQSAIIEVRLDGAVCAEEFSKSKALGRTFLRSSGTTIAVGIVTRIVERKS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaaaagtcagttatgggcttgattatgatgatgactatggaacttatgatgac
tatgattatgagcatgaagtaaaagttgatgggtatgatgactatgaagataatgttaca
tctaagcctggtaaggatggcagtaagcatggaatctggcaatgtccaatttgttcatat
gacaatgatgaaagttcattttgttgtgacatatgtggcgctatttatgtctattcttcc
actcatggcaaacaaaaagtaaatcctgcaaccaaagatacgggagcatctgcaatatcc
aagtctcatgcacaaatatatgtggcacccagaactaataatcttgttgatgagtttaaa
agcagaaaacccaatttgtatgagcaaggacgaccagagtatagaaggggagaatccaac
agtaaagggaaggaggctcaagtattatcttcagataatgaaatgcttgtgccttctgtt
catgggtcaaaagtaagtagcgactgtgaaagtgagagcagtcattccagggagaatatg
aatctaacagcaccactgagcagtaatctaaaccagttaaagttgggtaaacatcccatt
cgtaacaaaaaggtgaattcagagaccaagtaccaacccgaggaatggatgttaatggag
aaagaaccagaaattctgaagcaattaaatctcgcaattgttggtcatgtggactctgga
aaatctaccttatctggaagattgctacatcttttgggaaaagtctctaagaaagaaatg
cataaatatgaaaaagaggctaaagaaaagggaaaaggttcatttgcttatgcatgggca
atggatgagagcactgaagagagggaaaggggagtgaccatgactgttgctgttgcatac
tttgactccaagaagtatcatgttgttttacttgactctcctggtcacaaagattttgta
ccaaatatgatttcaggtgcggcacaagctgatgcagccgttctcgttgtggatgcatcg
actggttcctttgaggcaggtatggatggttatggtattggacaaacaagggagcatgct
caactggttagaagttttggtgttgagcaaatcattgtcgctgttaataagatggatgtt
gtggggtattctaaggaaagatttgattttataaaatcacaacttggtgcatttcttcgt
tcctgtggtttcaaggattcctctatcatttgggttcctcttagtgcagtagaaaaccag
aatctggttacaacctctgctgatgttaggttatcttcctggtgtcaaggggtttgtctg
ttagatgcaatagattcattgcaaacacctttgagggatgtgtcaaagtctcttattctt
cctatatgtgatgttgtcaagacctctatggggcaggttgcagcttgtggaaaattggag
actggggctatccgtaatggttcaaaggttctggttatgcctataggagcgctagcagca
gtgcggtccatcgagcgagactcaatcagctgcaatttggcaagagctggtgatcatata
gctgtcaccttacaagctatcgagactggccatgttttagctggtggagtgctctgtcat
cctgattatccagtgcaagtggctacttgtttggagctaaagatacttgtcttggacatt
ccaacaccgattctagttggatctcaggttgaattccatatacatcacgcaaaagtggct
ggaagggtgtcgaagatggtagcgttgctggaccagaaaactggaaaagtttccaaaaca
gcaccgcgcatcctcaagggaaaacaaagtgccatcatagaggtgcgactggatggagct
gtatgcgcggaggagttctcgaaatctaaagccctcggaaggacattcctaaggtcatca
ggaactacaattgcagtcggcattgtgactcggatagtcgagcgcaagtcgtag
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