Zingiber officinale (ginger): 122020404
Help
Entry
122020404 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase ATL4-like
KO
K10663
E3 ubiquitin-protein ligase ATL4 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122020404
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122020404
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
122020404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
CR_prot_dom_plant
zf-ANAPC11
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-RING_UBOX
zf-RING_16
zf-C3HC4_3
Vpu
DAP10
Prok-RING_1
Hemotin
Motif
Other DBs
NCBI-GeneID:
122020404
NCBI-ProteinID:
XP_042434260
LinkDB
All DBs
Position
9A:177957..179447
Genome browser
AA seq
349 aa
AA seq
DB search
MASDPRPPLSFASGPPPAISSSSSSSHSLSVSLFIIAAIIAAVAVTSLCIHLLLRFIASR
RRSSSSVSALPHALPFVDLASSSSASSAAEYRANAAALIDTLPVFTFSSALASLPKSSLD
CAVCLCPFRPDDELRLLPACRHAFHSSCVDPWLHTTPSCPLCRASISLPAPPLILPTSPP
LTGDQSASRSGSFRIEIGNVSRRRTLSADDPPIPPPPEPPPPHQRTYSIGSSFEYMVDEE
VEAVVSQITRRIEKLEKRREDSGSESAAAEPGDTVAAAAGRSGTGGWLKDYVDRLASSAS
SSFSSLRFSGRWSHRFDGDGRNSWDLEGSARREAEAGGYYGFYRWLVGA
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgaccctcgtcctcctctatcttttgccagcgggcctcctcccgccatctcc
tcctcctcctcctcctctcactccctcagtgtgagcctgttcatcattgctgccatcatc
gccgccgtcgccgtcacctccctctgcatccacctcctcctccgcttcattgcctcgcgc
cgccgatcttcctcctcggtctccgcacttccccatgccttgcccttcgtcgatttggcc
tcctcctcctcagcctccagcgcggccgaatacagggcgaacgcggcggcgctcatcgat
acgcttcctgtcttcactttctcctcggccctcgcctccctgcccaaatcttcgctcgat
tgcgccgtctgcctctgccccttccgcccggacgacgaactccgcctcctcccggcctgc
cgccacgcctttcactcctcctgcgtcgatccatggcttcacaccaccccttcctgcccg
ctttgccgcgcctccatttccctcccggcgccccccttgatcctgccaacgtctccgcct
ctcacaggtgaccagagcgcttcgagatctggaagcttccgaatcgagatcggaaacgtg
agtcgccggagaaccctctcggctgacgatcctccaatccctccgccaccagaaccgccg
ccgccgcaccagaggacatactcaatagggtcgtcgttcgagtacatggtggatgaggag
gtggaggcggtggtatcgcagatcacccggcgcatcgagaagctggaaaagcggcgggaa
gactccggatccgagtccgcagccgcggagcctggggacactgttgcggcggccgcggga
cgctcggggaccggcgggtggctaaaagactacgtggatcggctggcttcctccgcgtcc
tcgtccttctcctccctccgcttctccggccggtggagccaccgcttcgacggcgacggc
cggaactcgtgggacctagagggcagcgctcggcgcgaagcggaggcaggcggttattac
ggcttctaccggtggctagtaggggcgtaa
DBGET
integrated database retrieval system
