Zingiber officinale (ginger): 122020442
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Entry
122020442 CDS
T08725
Name
(RefSeq) uncharacterized protein LOC122020442
KO
K03504
DNA polymerase delta subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122020442
03410 Base excision repair
122020442
03420 Nucleotide excision repair
122020442
03430 Mismatch repair
122020442
03440 Homologous recombination
122020442
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122020442
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122020442
03400 DNA repair and recombination proteins [BR:
zof03400
]
122020442
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122020442
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
122020442
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
122020442
MMR (mismatch excision repair)
DNA polymerase delta complex
122020442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CDC27
Motif
Other DBs
NCBI-GeneID:
122020442
NCBI-ProteinID:
XP_042434301
LinkDB
All DBs
Position
9A:104719554..104726234
Genome browser
AA seq
526 aa
AA seq
DB search
MTAAGTLDLFPQVQTLVLDKLQVVSYKWLSRNFSVSSNDAKRLLQEFVEKHCDELEVIYT
VSGWSKNDPQTYCVKLASKHKLQDIKHIFEENYSVQVYSVQACIPNDLAVIWNAEFVQSE
ELFSHPSTEENCLRDNRFSAISNQAVKRTIDRNYVAAAAPRPKNGMAESKTTSSMKVQSV
QPLQHGMPEKSSIRNVMQAATVSSGQNEINSLHASTKATEPAIVKEAIHGGNSSKTKGQN
EKGSSGTTGSLASLWTNASTKSKTAAAAAATEITINAPNAAATAEAQICAQEALDAASSE
DEAATTIFRRDTNGSSGRKRRVVLDTSDDDDEDENVVSLAPPDLPKSKHVADSCPTNGSF
LETRKSNIEELKGDVLKETQDIMEKKEPLPLSNGDKSGSITAGGISLKPKINCHSQEEAD
WNKKDELPQSTSSLPKRRKVLKTRIDDRGREVTEVVWEGESLDNKKSDKDISTGDAANRP
PVVNKAQAPGKVAPTHPGGKNASKKSGKGGPKDAKQGNILSFFKKV
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgccggaaccctagatctcttcccacaggtccagacactcgtcctcgacaag
cttcaagtggtttcctacaagtggcttagtcgcaacttttcggtgtcatcaaatgatgca
aagaggttgcttcaagagtttgtggaaaagcattgtgatgagctggaggtgatatacact
gtgtctggatggtcgaagaatgaccctcaaacctattgtgtaaaactagcttcaaagcat
aagctgcaagacatcaaacatatatttgaagaaaattactcagttcaggtttacagtgtc
caagcatgcattcctaatgatcttgcagttatctggaatgctgaatttgtgcagtcagaa
gaactctttagtcatccctcaactgaagagaactgcttgagggacaacaggttcagtgcc
atttcaaaccaggctgtcaaacgcaccattgacagaaattatgttgctgctgctgcacca
cgacccaagaacggtatggcagagtcaaaaactaccagctctatgaaagtccagtctgtt
cagcctctccagcatggtatgcctgagaagtccagtattagaaatgtaatgcaggctgct
acagtgtcaagtggtcaaaatgagataaatagtctacatgcatccaccaaggctactgag
cctgctattgttaaagaggctattcatggtggtaattctagcaaaactaaaggtcaaaat
gagaagggttcatcagggactactggatcacttgcgagtctgtggaccaatgcttcaaca
aaatcaaagactgctgctgctgctgctgctactgaaatcaccattaatgccccaaatgct
gctgctactgctgaagctcaaatttgtgcacaagaagccctggatgccgctagcagtgaa
gatgaggctgctacaacaattttcaggcgagacacaaatggatcaagtggacgaaagaga
agggttgttttagatacctcagatgatgatgatgaagatgaaaatgttgttagtcttgca
cctccagatctacctaaaagcaagcatgttgcagattcctgtcctacaaacgggagcttt
ttggagacaagaaaatcaaacattgaagagctgaaaggggatgtattgaaggagacacaa
gacatcatggaaaagaaagaacctttgccattatcaaatggcgataaaagtggaagcata
actgctggagggatctctttaaaaccaaagatcaattgccatagtcaagaagaagctgac
tggaataagaaggatgagctccctcagtccacttccagtttgcccaaaagaagaaaagtg
cttaaaactcgaattgatgatcgagggagagaagttactgaggttgtttgggagggagaa
agtctagataataaaaaatcagacaaggatatatccacaggtgatgctgcaaacagacca
cctgtggttaacaaagcacaggcaccaggaaaggttgctccaactcatcctgggggcaaa
aatgccagcaagaaatctgggaaaggtggtccaaaagatgctaagcaaggaaatattttg
tcgttcttcaagaaggtttag
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