Zingiber officinale (ginger): 122020611
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Entry
122020611 CDS
T08725
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122020611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122020611
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122020611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
122020611
NCBI-ProteinID:
XP_042434546
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All DBs
Position
9A:complement(14812699..14834044)
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AA seq
322 aa
AA seq
DB search
MANLPPNLSLGGASFVGGPAPPSPSAASSGQPPKDRKIASAEQLVLDLCDAELRENALLD
LSKKRDIFQDLAPLLWHSYGTIAILLQEIVSIYPALSPPTLSPGASNRVCNALALLQCVA
SHPDTRILFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLQT
EIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLGNMVVSLA
DQPSTRLLKHIIRCYLRLSDNQRACGALRGCLPEMLKDGTFNNCLRDDPATRRWLTQLLH
NVSNTNLGASLQQGGFDHMMGN
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctgccccctaatctctcccttggcggtgcttcgttcgtcggaggcccagcc
ccgccctccccctccgccgcctcctccggtcagccccccaaggaccgcaagattgcgtcc
gcggagcagctcgtgttggacctctgtgatgctgagctcagggagaacgccctccttgat
ttatccaagaaaagggatatatttcaagatttagctccattattgtggcattcttatggc
actattgcaatacttcttcaggagatagtttcaatatatcctgcactttcaccgccaaca
ttgtcaccaggagcttcaaatcgagtttgcaatgcccttgctcttctccagtgtgttgca
tcacatccggatacacggattctttttctgaatgcacatatacctctttatctgtatcca
tttttgaatacaacaagtaagacaaggccattcgagtacttgaggcttaccagcttggga
gtaattggagcacttgtgaaggttgacgataccgaggtcatcagctttcttctccagact
gaaataattcctctgtgtctgcgcaccatggagatggggagtgagctctcaaaaacagtg
gcgacattcattgttcagaagatcttgttggatgatgtaggccttcgctatatttgtgct
actgcagagcggttcttcgctgtcggcagcgttttgggcaacatggttgtgtctctggct
gaccaaccttctacaaggttgcttaagcacataatcagatgttacctgaggctgtcggat
aatcaaagggcatgcggagcactgcgtggttgtctcccggagatgctgaaagatggaaca
ttcaacaactgtcttcgggacgacccagcaacccgtcgttggcttacacaactactacac
aatgtgtccaacactaacctgggggcatctcttcaacagggagggtttgatcacatgatg
ggcaactag
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