Zingiber officinale (ginger): 122020701
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Entry
122020701 CDS
T08725
Name
(RefSeq) single-strand DNA endonuclease 1-like isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122020701
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
122020701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
XPG_I_2
Chromo_2
Chromo
Motif
Other DBs
NCBI-GeneID:
122020701
NCBI-ProteinID:
XP_042434641
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Position
9A:complement(18295905..18319327)
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AA seq
572 aa
AA seq
DB search
MGVKNLWDILESCKKILPLHHLQNKKLCVDLSCWLVQLQNSCRTPAGIKEKVYLKNLFHR
LRALVALNCSLILVADGAIPSMKLSTYRSRLGFHKVMQEDANSNATSSISICRNKGSEFS
CMIKEAKFLGTTLGIPFLDGLEEAEAQCASLNMEYLCDGCFSSDSDIFLFGARTVYRDIF
LGETGYVICYEMKDIEQKLGFGRNSLISLALLLGCDYSQGIHGFGPESACRIVKSLGDDS
VLHQIISVALNMERRCQRGKKITKNDCCNVNKENEHVVIENWQNVEPDHQYVEVVNAYLR
PKCYPPDSEAVRRVCIDIPFQRTQFQHLCEQYFGWSPDQTDHYILPKIAERDLRRFANLR
STSSGLGARIPLHEMPVSCPVSAIIKQRKVQGQEYYEVSWQRRDGLCNSIIPADLIISAC
PEKLAEFMGRKAEVKKETVRPRKSSKATANGLHEPAANARKPRKLNKDAISKINFQLQGL
LLDIERESRALPEPVNCFLETNSENVIPELIDLCSPSPLPSSFKAAKSLKSTDLHVDIID
ICQSENEASSPEHEKKARELRSFINTIRKDLY
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgaagaacttgtgggacatcttggaatcgtgcaagaaaatcctaccgcttcat
catctccagaacaagaagctgtgtgtggatctttcctgctggcttgttcagttgcagaac
tcctgccgcactccggcgggcattaaggagaaggtttatctaaaaaacctcttccatcgc
cttagagccctagtcgccctcaactgtagcctcattctagttgcagatggagcaattcct
tcaatgaaactatccacttataggagccggttgggctttcataaggtcatgcaagaggat
gcaaactccaatgcaacttcatcaatttctatatgtagaaacaagggttcagaattttca
tgtatgataaaagaagcaaaattccttggaacaacacttgggatacctttcttagatggg
ctagaggaagcagaagctcaatgtgcatcgctcaacatggaatatttatgtgatggatgc
ttcagttcagactctgatattttcctctttggagctaggacagtatatagagatattttt
cttggagagactggctatgtaatctgctatgaaatgaaagacatagagcaaaaacttgga
tttggaaggaattcattgatttctttggctcttcttcttggctgtgattattctcaggga
attcatggctttggtccggaatcagcatgcaggattgttaaatctctaggggatgactct
gtcttgcatcaaattatttctgtggcattgaatatggaaagaagatgtcaaaggggaaag
aagattacaaagaacgactgctgtaatgtgaacaaggagaatgaacatgttgtcatagag
aattggcagaacgtggaacccgaccaccaatatgttgaagttgtcaatgcttacctaaga
cctaaatgttatccacctgattcagaagccgtgagaagggtttgtatagatatccctttt
caacgcacacaattccagcatttgtgtgaacagtatttcggctggagccctgatcaaaca
gatcattatatccttcccaaaattgctgaaagggatcttaggcggtttgctaatctgcgt
tcgacatcatctgggttgggagctagaattcctttacacgagatgccagtttcttgccct
gtatcggcgataataaagcagagaaaagtgcaaggacaagagtattatgaggtttcttgg
caacgcagggatggtctctgtaactccattatccctgctgatttgattattagtgcctgc
ccagaaaaacttgcagaattcatgggaaggaaagcagaagtgaagaaagaaacggtaagg
ccgagaaagtcatccaaagctactgcaaatgggctccatgaaccagcagcaaatgccaga
aagccaaggaagttgaacaaagacgccattagtaaaatcaacttccagcttcaaggcctt
ttgcttgacatcgaacgagaaagccgtgcattacctgaacccgttaattgcttcctggaa
actaattctgaaaatgtaatccccgagctcattgacctctgcagcccttccccattgccc
tcttcatttaaggctgccaaaagcctaaagtccactgatttgcacgtggatataattgac
atatgccagtcagaaaatgaagcatcttctcctgaacacgagaagaaggcaagagagctt
aggtcttttatcaacactatcagaaaagatctgtattag
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