Zingiber officinale (ginger): 122020908
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Entry
122020908 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122020908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122020908
03036 Chromosome and associated proteins [BR:
zof03036
]
122020908
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122020908
Coactivators
SAGA/TFTC/STAGA complex
122020908
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122020908
STAGA complex
122020908
TFTC complex
122020908
SAGA complex
122020908
SLIK complex
122020908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
122020908
NCBI-ProteinID:
XP_042434886
LinkDB
All DBs
Position
9A:complement(16606918..16611241)
Genome browser
AA seq
543 aa
AA seq
DB search
MSIVPKETIEVVAQSIGISNLSPEVSLALAPDVEYRLREIMQEAIKCMRHSKRTVLTAED
VDSALSLRNVEPIYGFASTDPLRFKKAVGHKDLFYLDDRDLDFKEVIDSPLPKAPLETAV
VAHWLAIEGVQPAIPENSPVEAIVSPSENKKSENTKEDGLLVDLKLPVKHVLSRELQLYF
DKITELTVTRPESNLFKEALVSLAMDSGIHPLVPYFSYFIADEVARSLNDLPILFALMRV
VRSLLQNPHIHIEPYLHQLMPSIITCVVAKRLGSRIADNHWELRDFSANLAASVCRRYGH
VYHNLQSRLTKTLINAFLDPSKALTQHYGAIQGLAALGPSVIRLLVLPNLEPYLQLLEPE
MQLEKQKNEMKRKEAWRVYGALQCATGKCLYERLKMMPTLLSPPKHGVWRINPRIAISRI
KRKLSTNNSSQQPPFKKMAVDGPAGTIQAIATTTANLQGAEDGFSPQSSGAGTAQSSAPG
QVSIDSIGSRREKGGSGAPKGSVVLAQAWKEDLDAGNLLSSLFQLFGEGILSFTQSPEKS
FFL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcgtcccgaaggagacgatcgaggtggttgcgcaaagcattggcatctctaac
ctctcccctgaggtctctctcgcgctcgcccccgatgttgagtaccgtcttcgggagatc
atgcaggaggcaataaagtgcatgcgccactctaaaaggacggtcttgacggcagaagat
gtggatagtgctctcagtctgaggaatgtcgagcctatttatggatttgcatcaactgat
cccttgcggttcaagaaggcagtagggcacaaggatctgttctatcttgatgacagagat
ttggatttcaaggaggtcattgattcaccattacccaaagcgccacttgaaactgctgtt
gtggctcactggcttgctattgaaggggtgcaacctgcaattcctgaaaattctcctgtt
gaagcaattgtatccccgtctgaaaataagaaatctgagaacaccaaggaagatggactg
cttgttgatctcaaactgcctgttaagcacgtattatctagggagctacagctctacttc
gacaaaattactgagcttacagttacaagacctgaatccaaccttttcaaagaagcttta
gtgagtttagcaatggattcaggaattcatccgttggttccatacttttcctacttcatt
gcagatgaggttgctcggagcttgaatgatcttcctatcttgtttgctttaatgcgtgtg
gttcgaagccttctccaaaatccgcacattcacatagaaccttatttgcatcagctgatg
ccatcaattattacatgcgtcgttgccaaaaggttggggagtagaatagcagataaccac
tgggaactccgtgatttctcagcaaatctagctgcatcagtgtgtagaagatacggtcac
gtgtaccacaatcttcagtcgcgattgacgaagacattaattaatgcttttcttgatcca
tctaaagcactcacacaacattatggcgccattcaagggcttgctgcactgggaccaagt
gtgatacgtcttcttgttctgccaaatcttgaaccgtatttgcaacttttagagcccgag
atgcaactagaaaagcagaagaatgagatgaaaaggaaagaagcgtggcgagtgtatggt
gctttacagtgtgccactggtaaatgtttgtatgaacggctgaagatgatgcctaccttg
ttatctccaccaaaacatggtgtctggaggattaacccaaggattgcaataagcaggatc
aagcggaagttgagcaccaataactcatcacagcagccacccttcaagaagatggcagtt
gatggaccagcaggcacaatacaggctattgctacaacaacagccaacctgcaaggagca
gaggatgggttttctccgcaatcatctggtgctggtacagcacaatcttctgccccaggt
caggtatcgattgattcaattggcagtagaagagagaagggcggcagcggagcacccaag
ggatcggtggtcctggcccaagcttggaaggaggatcttgatgcaggaaacctcctatcg
tcactgtttcagttgtttggggaaggcatattgtcattcactcagtcgccggagaaatct
ttctttctctag
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