Zingiber officinale (ginger): 122021095
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Entry
122021095 CDS
T08725
Name
(RefSeq) polygalacturonase-like isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Module
zof_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122021095
Enzymes [BR:
zof01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122021095
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122021095
NCBI-ProteinID:
XP_042435113
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Position
9A:24816175..24818072
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AA seq
390 aa
AA seq
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MYSSSMMARAVCLLLIALRLSLLAAASYNVVDYGAVADGRTDSAKAFLAAWSAACAANKP
ASMYVPAGRFMVGQATFQGPCNNSAIRVFIAGTLVAPSGYTAAANWLRFKYVNGLSVLGG
IIDGRGQAFWACKKAGRSCPQGATSLAIALSTNVVIRGLASHNSEVFHLSIFASSGVKIQ
GANIIAPGDSPNTDGIHIQKSTDVSVVSTVIKTGDDCISMGEGTSNVWIEKIHCGPGHGI
SIGSLGATPSETRVQNITVTAVTFSGTQNGLRIKTWGKPNGGSVEGVTFSHAVMQNVGYP
IVVDQNYCPGNVDCPGQSSGIRISQVSYMDIQGSSATPVAVKFDCSPTNPCRGLDLRDIK
LTYLGNKQAEAYCKNAQGSAAGTMNPPSCI
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtattcttcttccatgatggcacgagcagtgtgcttgctcctcatcgccctccgtctt
tcccttcttgcagcagcaagctacaacgtagtggactacggcgcggtggccgacggccgc
accgactcagccaaggccttcctggccgcatggtcggcagcctgcgccgccaacaagccg
gcgagcatgtacgtgccggccggccggttcatggtcggccaagccaccttccaaggtccc
tgcaacaacagcgccatcagggtcttcatcgccggcaccctcgtcgctccctccggatac
accgccgccgccaactggttgcggttcaagtacgtcaacggcctgtccgtcctcggcggc
atcatcgacggccgcggccaggccttttgggcgtgcaagaaggccggccggagctgccca
caaggcgccacttcgctggcgatagcgctgtcgacgaacgtggtcatcagaggattggct
tcccacaacagcgaggtcttccacctctcaatcttcgccagcagcggcgtgaaaatacag
ggcgccaatatcatcgcgccgggggacagccccaacaccgacggcatccacatccagaaa
tcgacagatgtcagcgtcgtcagcacggtgataaagaccggcgacgattgcatttccatg
ggagaaggaaccagcaacgtctggatcgagaagattcattgcggcccgggacacggcata
agcattgggagcctgggggcgacgccgtcggagaccagagtgcagaacatcacggtgacg
gcggtgaccttttcggggacgcagaatgggttgaggatcaagacttgggggaagccgaac
ggcggctccgtggagggcgtcaccttctcccacgccgtcatgcagaacgtggggtacccg
atcgtggtcgaccaaaactactgccccggcaacgtcgactgccccggccagagctccgga
atcaggatcagccaggtctcgtacatggacatccaggggtcgtcagcgacgccggtggcg
gtgaagttcgactgcagtccgacgaacccatgcaggggactggatttgcgtgatataaag
ctgacttatttgggaaacaagcaggcggaggcctactgcaagaatgcgcagggaagcgcc
gccggcacgatgaatcctcccagttgcatttga
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