Zingiber officinale (ginger): 122021425
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Entry
122021425 CDS
T08725
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122021425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122021425
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122021425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122021425
NCBI-ProteinID:
XP_042435482
LinkDB
All DBs
Position
1A:complement(25888895..25894045)
Genome browser
AA seq
460 aa
AA seq
DB search
MDSDEGKVFIGGISWDTSEEKLKEHFGDYGEVLDAVIMRDKITGRPRGFGFVVFADPSIL
DRVLQDKHTIDGRTVEAKRALSREEQQISGRSGNQTSGSAFAGRSTGAGSGANIRTKKIF
VGGLPPNLTEDGFRQYFESYGAVTDAVVMYDQNTHRPRGFGFISFESEDTVDIILQKTFH
DLNGKAVEVKRALPKDVNTNIGSGRSLGSGSHQSYGGSTGNGSSYDSGAEANRYMQPQGA
GNSLSAYGSTGYGTPGYGYGAANSGISYAGYAVGGYGGGGAGYSGPSGPYGNPTAPMSGY
IGGPPGTQRNLWNNQASAGYGGAATYGSSWNASASSGGSSAPPSGQSGTSGYMGQGYGYG
GYGGSEVPYGNQGGGYGSFGGRGSGCPVNTSAGNSGEQGAGSAYTGGGYSSSSSDYTNSW
RPDPAQAGLYGSSQVNGPSGGPVNYGANYGGGQGRQAQQQ
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggattcggacgaggggaaggtctttatcggaggcatctcgtgggatacctctgaggaa
aaactcaaggagcacttcggagactacggggaggtccttgacgccgtcatcatgagggac
aagatcactggccggcccaggggttttgggttcgtcgtatttgcagatccctctatcctc
gatcgcgtacttcaggacaagcacaccattgatggtcgcaccgtggaagccaaaagagct
ctttcaagggaagaacaacaaatatctggaagatctggaaatcaaacttctggaagtgcc
tttgctggtaggtcaactggagcaggttctggtgcaaacataaggaccaagaagatattt
gttggaggtttgcctcccaatttaacagaggatgggtttcgtcaatactttgaatcatat
ggtgctgtgactgatgcagttgtgatgtacgaccaaaacactcatcgccctcgaggattt
ggcttcatctctttcgaatcagaggatactgttgatataattcttcagaaaacttttcat
gatctgaatggaaaggctgtggaagtcaagcgtgcccttccaaaagatgtaaatacgaat
attggcagtggccgatcattgggaagtggatctcatcaatcttatggtggttcaactggt
aatggtagctcttatgacagtggggcagaggctaatagatacatgcaacctcaaggagca
ggcaacagcctttcagcatatggttctactggatatggcacacctggttatgggtatgga
gctgcaaacagtggcattagttatgcagggtatgcagttggcggttatggtggcggcggt
gctgggtacagtggaccttctggtccttatggaaatccaactgctcctatgtctggttat
ataggtggtcctccaggtactcaaaggaacctatggaataatcaggcttctgcaggttat
ggtggagctgcaacttatggatcctcatggaatgcctcagcatctagcggaggatctagt
gcaccaccatcaggtcaaagtggaacttctggatatatggggcagggttatggatatggg
ggctatggagggtcagaagtcccttatggtaatcaaggtggtggttatgggtcctttggt
ggccgtggtagtggttgtcctgttaatacttctgcaggcaattcaggggaacaaggagca
ggttctgcttacacaggtggaggttattctagttcaagctctgattataccaattcttgg
aggccagaccctgcacaagcagggttgtacggatcttctcaggtgaatggaccttctggt
ggtccagtcaattatggagctaattatggcggtggtcagggtaggcaagcccagcagcag
taa
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