Zingiber officinale (ginger): 122021478
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Entry
122021478 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122021478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122021478
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
122021478
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
HECT type E3
122021478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
ARM_ARMC5
HEAT_SCC3-SA
Motif
Other DBs
NCBI-GeneID:
122021478
NCBI-ProteinID:
XP_042435533
LinkDB
All DBs
Position
9A:1708412..1716561
Genome browser
AA seq
1500 aa
AA seq
DB search
MDRDQKSTDCDEELTVDRQDCSSSDNHSSSSSSSSSDSKSQDLVSDGDGESSDHELPGYD
PFNFNGVDEYVLMRRMHKVVLALAADGSEESAQLATLSELCEVLSAMEYATQGYRLKALV
QPLVNLASKDGNPKILLQAVRALTYLCDVRPSIAEEIVRHGAIPVLCGKLLAIEYLDVAE
QCLEALEKLSKEQPVACLQAGTVNAVLTYIDFLPSNIQQVAVTTITNICKKLPPDCSSII
MEAVPKLCSLLQYENVKLVETVSLCLEWIVFSVRHSPNFMDELFKHGVLQKSLELLANDN
HKSLSSSTFSGLMGVLTRLAFSSKLAVRTLFELSISKTLSSILIGSDVSDNSAVVSTEDV
QNSQVFKALKLANLLIPPREGNVPNNQNMQAEEKILMDESNFLFKFSLEFLPASIQVVNN
GANDCVCYACLSIIKRIARYSTPDMLLESIKDINISSFLAGLLARKDIHLLTSTMEIVEI
LMQKLPGVFLSSFVKEGVFYAINMLLMQEESTASAQHSDDKIHARDVSRCLCYVFFSSSI
YPYEVRPCMLKEDAVQNLVKHIKNCYHLANGVANSDMSCTKTLQHLKTLCSALSDSGDKQ
LNDVGDLQYSTQILDEVMREISQGEPLSTFEFVESGIARSLAHYLCNDKYLLGIHDIGLS
DHILTVLKKFQIFASICLSKPSQSCMETILLFLVKKLLNALSSLDSFPVLKSQMFKPRDS
YTDIPRTRFTKNPCLKVRFVRDKEESNLMDFDKILSVDISCSLVEVVEAYLWPKVSNQHI
LPTVTVDNHISKPDFTASRLQNASERSRIETHNNISYGTSVSNSSEVIRSEEGQLLPAEI
SKKLSSDTDIAQGRMTIVSPSVANTKPRLSFSLRGKQLDRSNTLYQAVLEDQISSKVVTI
VGSKFWDQVYVFTYKIAEEEKTDKNHKLDSVSKSNFFLNKLGFSWQKLPFFPTKLQAEFP
SNIDRANSSYDFLFMWKILEGLNRFSLELLTDERIGAFAEGRIDNFDDLKLIASSVPEVE
FVSSKLTDKLEQQMRDNLVLQTGCFPSWCSQLMNACPFLFSFEARLKYFYLTAFGSLRNQ
RSNMLHSGSSCSNSSSEWHSYSSSPPRKKFKVDRNSILECAAKMMKLHAQSKGSLEVEYE
EEVGTGLGPTMEFYTLISREFQKAGLGMWREDHCSCKSSTRGDSSFLFAPCGLFPRPWSR
TRSDPFEFSDVKEKFLLLGMLVARAIKDGRMLDIPLSRAFYKIMLEQELNICDIQSFDPE
LGRILLEFRALANRKKFVESVSGESNTVPSKLYYRNMSVEDLSLDFTLPGYPYYELASES
VKMVNIDNLEEYVALVVDATIGSGVARQINAFKCGFNEVFPLKYLQMFTEDDLEGLLCGE
QDAWKLSELVDHIKFDHGYNASSPTAIDLLDIIQEFDYDQRRAFLQFVTGAPRLAHGGLA
ALNPKLTVVRKHSDFGADLGLPSVMTCANYLKLPQYSSKDIMRERLLYAISEGQGSFHLS
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtgatcagaagagcacggattgtgatgaagaactcacagtggataggcaggat
tgcagttcctcagacaaccactcctcctcttcctcttcctcttcctccgactcgaaatcc
caggacctggtctcggacggcgacggcgagtcgtcggaccatgagttgcccggttatgat
ccgttcaacttcaatggcgtggatgagtatgtcttgatgcggaggatgcacaaggtcgtc
cttgccctcgccgctgatggatcggaggaatccgcgcaactggccaccctgtccgagctt
tgcgaggttctctccgccatggagtacgccacgcagggctaccgcttgaaggcgctcgtg
cagcctctagtgaatcttgcttccaaggatggcaaccccaagatcctgcttcaggctgta
agagcgctaacttatctctgcgacgtgaggccgtcgatagccgaagaaatcgtgcggcat
ggcgcaattcctgtcctctgtggaaagcttttagctatcgaatacttggacgttgctgag
cagtgtctcgaagcattggagaagctttcgaaggaacaacctgttgcatgtttacaagcg
ggaactgttaatgcggtcttaacttatatcgatttccttccatctaatattcagcaagtt
gcggttacaacaataactaatatatgcaagaaacttccgcctgattgctcatcaattata
atggaagcagtccctaagttatgcagtcttctccagtatgagaacgtgaagctggttgaa
actgtttctttgtgtctggaatggatagttttctctgttcgccattcccctaactttatg
gatgaactgttcaaacatggggtgctacagaagtccttggaattgttagctaatgataat
cacaagtcacttagcagctcgaccttttccggtttaatgggtgttcttaccagactcgct
ttttcttctaagctagctgttaggaccctatttgagcttagtatcagcaaaactttgagc
agcatcttaatcggttctgacgtgtcagataactctgcggttgtttctactgaagatgtg
caaaatagtcaggtatttaaagcattaaagttagctaacctgctaattcctccaagagag
ggaaatgttccaaacaatcaaaacatgcaagctgaggagaagattttaatggatgaatcc
aatttcttgtttaaattctctttggaatttcttccagcttccatccaggttgtgaacaat
ggtgcaaatgattgtgtatgctatgcctgtctttccatcataaaacgtattgcccgttat
agcacgcctgatatgcttttggaatcaatcaaagatataaatatctcaagttttttggca
gggctgttggccagaaaagatatacatctactaacttctacaatggagattgttgagatt
ctgatgcaaaaacttcccggtgttttcttaagctcttttgtcaaggaaggagtattttat
gctatcaacatgcttttaatgcaagaagaatccacagcatctgcacaacactcagatgac
aaaatacatgccagagatgtttccagatgcctgtgctatgtgtttttttcatctagcatt
tacccttatgaagtaagaccgtgcatgctgaaagaggatgctgttcaaaatttggtaaag
cacataaaaaattgctaccatttggccaatggagtagccaactctgacatgtcatgtact
aaaactcttcaacatctcaagactttgtgcagtgcgctaagtgatagtggggacaaacaa
ttaaatgatgttggtgaccttcaatattcgactcaaatattagatgaagtgatgagagaa
atttctcagggagagcctttgtcaacttttgagtttgttgagagtggtattgctagatct
ctggctcattatttatgcaatgacaagtatctgcttggaattcatgatattggcttatca
gatcacattctaactgtgctgaagaaattccaaatatttgcttcaatttgcttgtcaaag
cctagtcaaagttgcatggaaactattttgcttttcttagtgaagaagctgctgaatgca
ttgtcttcgttggatagctttcctgttcttaaaagccaaatgtttaagccaagagacagt
tacacagatatccctcgtacacgattcactaagaacccttgtctaaaagttcgctttgtg
cgtgataaagaagagtcaaatttaatggactttgataagattctaagtgttgatatttct
tgttccttagtagaagttgtagaagcatatctctggcctaaagttagcaaccagcatata
cttccgacagtgacagtggataaccatatcagcaaaccagacttcacagcttcaaggtta
cagaatgcctcagaaaggagtcgtatagaaacacacaataacatctcatatgggacaagt
gtttcaaattcatcagaggtaattagaagtgaagagggacaacttttacccgcagagatt
agcaaaaaattgtcatctgacacggatattgctcaaggaagaatgacaatagtatctcca
agtgttgcaaacacaaagccaagattatcttttagcttgagaggaaaacaacttgaccgc
tctaacaccctttatcaagcagttctagaggatcaaatatcttcaaaagttgtcacaata
gtggggtcaaaattctgggatcaagtttacgtatttacctataaaatagctgaagaagaa
aaaacagacaaaaaccacaagcttgattcggtttctaagtcaaatttcttcttgaataag
cttgggttctcatggcagaaacttccctttttccctaccaaattacaagctgagtttcct
tctaacattgatagagcgaattcctcatatgattttttatttatgtggaaaatattggag
ggcttgaaccgcttttcattggaattgttgactgatgaaagaattggtgcatttgctgag
gggagaatagataactttgatgatttgaagttgatagcttcttcagttccagaagttgag
tttgtgagtagcaagctaactgataagttggagcagcaaatgagagacaatctggtatta
caaactggttgttttccatcatggtgtagccagttaatgaatgcatgccctttcttattt
tcttttgaggcaagattgaagtacttctacctcacagcatttggttctttaagaaatcag
cgcagcaacatgctacattcaggtagcagctgctcaaactcctccagcgaatggcactct
tattcaagttctcccccacgcaagaagtttaaagttgaccggaacagcatccttgaatgt
gctgcaaaaatgatgaaattacatgctcaaagtaagggctctcttgaagtagaatatgaa
gaggaagttggtactggtctaggtcctacaatggagttctacacactaataagtcgagaa
tttcaaaaggctggattgggtatgtggagagaggatcactgttcctgtaaaagtagcact
cgtggtgattcttcatttttgtttgctccatgtggactgtttcctcgtccatggtcaaga
acaaggtcagatccttttgaattctcagatgtgaaggaaaagttcctcctcctcggcatg
ctggtagccagggcaattaaagatgggaggatgttggatataccactttcgagagccttc
tataagattatgctcgagcaggagcttaatatatgtgatatccagtcatttgacccagaa
ctcggaaggattttactggagtttcgagctcttgccaataggaaaaagtttgttgaatca
gtttctggagaaagtaacacggttccatcaaagttatattacaggaacatgagcgtagag
gatctctctcttgatttcactcttccaggctacccctattatgaacttgcatcagagagt
gtaaagatggtgaatattgacaacttggaagaatatgttgcgctggtggtagatgcaaca
attggcagtggagttgcgagacaaattaatgccttcaagtgtggatttaatgaggtattt
cctctgaaatatcttcagatgttcactgaagatgatttggaggggctactttgtggagaa
caggacgcttggaaattatcagagcttgtggatcacattaagtttgaccatgggtataat
gcaagtagccctacggccatcgatttgttagatatcattcaagaatttgattatgatcag
cgcagagctttcttgcaattcgtaactggagctcctcgtctcgcccacggaggcttggct
gcccttaacccaaaactaacggtagttcggaagcactctgattttggagctgatctgggc
ttgcccagtgtcatgacttgtgctaattatctaaagctcccccaatactcatccaaggac
ataatgagagagagattgttatacgcgatatccgaaggtcagggatcgtttcacctctcg
tag
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integrated database retrieval system
