Zingiber officinale (ginger): 122021491
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Entry
122021491 CDS
T08725
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122021491
09123 Folding, sorting and degradation
03018 RNA degradation
122021491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122021491
03041 Spliceosome [BR:
zof03041
]
122021491
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122021491
mRNA cycle factors
Stress granule specific factors
122021491
Spliceosome [BR:
zof03041
]
Complex C
Other components
Complex C specific factors
122021491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RBD_DEAH11
RRM_Nup35
RRM_7
RRM_YTH1
OB_RNB
Motif
Other DBs
NCBI-GeneID:
122021491
NCBI-ProteinID:
XP_042435549
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All DBs
Position
1A:complement(26211887..26227824)
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AA seq
653 aa
AA seq
DB search
MAQVQIQPHAVVSSPLAAVVSGGTAFQIASTSLYVGDLDLGVTDAHLYDVFSQIGQVVSV
RVCRDINTRRSLGYAYVNFSDPADAAKAIEVLNFTLLNGKTIRIMYSNRDPSVRKSGSAN
IFIKNLDKSIDNKALQDTFSVFGNILSCKIATDPSGHSKGYGFVQFEQEEAAQNAIQKLN
GMLMNDKKVFVGPFVRKQEREGAANSAKFNNVFVKNLSESVTEDTLLEVFGEFGKITSCV
VMKEGDGKSKCFGFVNFENPEAAAQAVQELDGKKFDDKEWYVGKAQKKSEREQELKEKFA
KSKQESTEKFQGVNLYLKNLDDSIGDDSLRELFSGFGTITSCKVMRDNNGKSKGSGFVAF
QSPEDASRALSEMNGKMVGSKPLYVAVAQRKEDRRAILQAQFSQMRPVAMQASIAPRVPL
YPPGAPGLGQPLFYGQPPPGLVPQPGFGFQQPLVPGMRHGAAPFPNFFMPMVQQSQQVQR
PGGRRVPLGPVHQIQQQPMPMIQQQVLSRGGRPYRYPAGRNMQELPGMAGGMFSVPYDMG
AMPVRDAGISQAIPIGELTSALAKATPQQQRTLLGESLYPLVDQLEHDHAAKVTGMLLEM
DQTEVLHLLESPEALSAKVAEAMEVLRSVAQQQQQDFPPVDRLATLSLNNVVS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagtacagattcagccccacgccgtggtttccagcccgttggcggcagtcgta
tcaggcggtaccgcgttccagatcgcctcgacgtcgttgtacgtcggcgacctcgatttg
ggcgtcacggacgcgcatctgtacgatgtctttagccagatcgggcaggttgtgtctgtc
cgcgtgtgtcgcgatatcaacactcgccgctcacttggttacgcctacgtgaacttcagc
gatcccgcggatgcggcaaaggcaattgaagttcttaactttacacttcttaatggaaag
actattcgtataatgtattcaaatcgtgaccctagtgtgcgcaaaagtgggtccgcaaac
atttttatcaagaatctggacaagtctatagacaacaaagcactacaagatacattttca
gtctttggtaacattctgtcatgcaagattgctacagatccatctggtcactcaaaaggg
tatggatttgtccaatttgaacaagaggaggcagcacaaaatgcaatccagaagctaaat
ggcatgctcatgaatgataagaaagtattcgttgggccatttgttcgtaaacaggagagg
gagggggctgctaacagtgctaaatttaataatgtatttgtaaaaaatctctcagaatct
gtcacagaggatactctactggaagtttttggtgaatttgggaagatcaccagttgtgtt
gtgatgaaggagggagatggaaaatccaaatgtttcggctttgtcaattttgagaatcct
gaagctgctgctcaggctgttcaggaacttgatggtaagaaatttgatgataaggaatgg
tatgttggtaaagcccaaaagaagtctgaaagagagcaagaacttaaagagaaatttgca
aaaagtaagcaggagtctactgaaaaattccaaggagtaaacttatacttaaagaatttg
gatgatagcattggcgatgatagcttaagagaactgttttctggatttgggacaatcacc
tcttgcaaggtcatgcgtgacaataatggtaagagcaagggatctggatttgtcgcattc
cagtctcctgaagatgcatctcgggctctatcagagatgaatggaaaaatggtcggcagt
aaaccactttatgttgcagttgcacaacgcaaggaagatagaagagcaatattgcaggct
cagttttcgcaaatgcgtccagtggccatgcaagcttcaattgcacctcgtgttccatta
tatcctcctggcgctcctgggttagggcagccacttttctatggtcaaccaccacctgga
ctagttcctcagcctggattcggcttccagcagccacttgttccggggatgagacatgga
gctgcgcccttccccaatttctttatgccgatggtccaacaaagtcagcaagttcagcgc
cctggtggtaggcgtgtaccattaggtccagtgcaccagattcaacagcagcctatgcca
atgattcaacagcaggtgctttcaaggggtggacgtccctatcgatatccagcagggcgt
aacatgcaagaacttcctggcatggccggagggatgttctctgtcccatatgacatgggt
gctatgcccgtgagggacgcaggaatttcacaggctattcctattggagaattaacatca
gctcttgcaaaagctacaccacagcagcagagaacgttgctgggtgagagcttgtaccca
cttgtggatcagctggaacatgaccatgctgccaaagtgaccgggatgctcttggaaatg
gatcaaactgaagtgctccatttgctggagtctcccgaagctttaagtgcaaaagtagca
gaggctatggaagtcttgagaagtgtggctcagcagcagcagcaagatttcccaccagtt
gaccggttggcaacattgtcattgaataatgttgtctcctga
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