Zingiber officinale (ginger): 122021540
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Entry
122021540 CDS
T08725
Name
(RefSeq) probable pectate lyase 20 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122021540
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122021540
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122021540
NCBI-ProteinID:
XP_042435596
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Position
9A:61684519..61687652
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AA seq
478 aa
AA seq
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MVVASVSGRSAMALGSMGRPALLLLCLVLLIVVGGVSASRAGAGAAASSASPANESASMG
KRAGAGAVASTGSSASPANESASMGKSAAERQTVAAVVDDPELIAAEVHMVTQNSTARRN
LAYLSCSTGNPIDDCWRCDPEWHENRKRLADCGIGFGRNALGGRDGEIYVVTDHRDDDPV
NPRPGTLRYAVIQEEPLWIVFKRDMVITLSEELIMNSFKTIDGRGANVHIANGACITIQF
VTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGVSIFGASHIWVDHNSLSNCAD
GLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAYNHFGEGLIQRMPRC
RHGYFHVVNNDYTHWEMYAIGGSADPTINSQANRYLAPTNAFAKEVTKRVDTDSSVWKSW
NWRSEGDLLLNGAYFTPSGAGASASYAKASSLGAKSTSMIDSITVDAGALRCRKGVQC
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcgcgagcgtgtccgggagatcggcaatggcgttgggatcaatggggcgtccg
gcattgctgcttctctgcctcgtactgctgatagtagtcggtggcgtctccgcctccagg
gcgggagctggggcggcggcctcaagtgcttctccggctaacgagtcggcttccatgggg
aagagggcgggagctggggcggtggcctcgacgggctcgagtgcttctccggctaacgag
tcggcttccatggggaagagtgccgccgagcgtcaaacggtggcggccgtggtcgacgat
ccggaactgatcgcagctgaggttcacatggtgacacagaacagcacggctcgccgcaac
ctcgcctacttgtcgtgctcgactggcaatcccatcgacgactgctggcgctgcgacccg
gagtggcatgagaaccgcaagcgcttggcagactgcggcattggcttcggccgcaacgcg
ctcggcggccgcgacggtgaaatctacgtggtgaccgaccacagggacgatgatcccgtg
aacccgcggccgggcacgctccgctacgcggtcatccaagaggagcccctctggatcgta
ttcaagcgcgacatggtcatcaccctctccgaggagctgatcatgaacagcttcaagacc
attgacggccgcggagccaacgtgcacatcgccaacggcgcctgcatcaccatccaattc
gtcaccaacatcatcattcacggcctccacattcacgactgcaagcccaccggcaacgcc
atggtccgtagctccccttcccactacggctggcgcaccatggccgacggcgacggcgtc
tccatattcggtgccagccacatttgggtcgaccacaactctctttccaactgcgccgac
ggcctcatcgacgccattatgggttccaccgccatcaccatttccaataattacttcacc
caccacaacgaggtgatgctgctgggccacagtgattcttacgtgaaggacaaggccatg
caggtcaccatcgcctacaaccacttcggagaaggtttaattcagagaatgccaaggtgc
aggcacggctacttccatgtggtgaacaatgactacacgcactgggagatgtacgccatt
ggtggaagcgctgacccaaccattaacagccaagcaaacaggtatcttgcccctaccaac
gccttcgctaaggaggtaaccaagagagtcgacacagattcaagcgtgtggaagagttgg
aactggagatcagaaggtgacctgcttctgaacggggcttacttcaccccctctggagct
ggagcatctgctagctacgccaaggcttctagcctcggagccaaatccacgtccatgatt
gactccatcactgtcgatgcaggtgcgctgcgctgtcgcaagggtgttcaatgctaa
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