Zingiber officinale (ginger): 122021597
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Entry
122021597 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122021597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122021597
03012 Translation factors [BR:
zof03012
]
122021597
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122021597
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122021597
Translation factors [BR:
zof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122021597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
AAA_16
AAA_30
PhoH
Dicer_dimer
AAA_11
Motif
Other DBs
NCBI-GeneID:
122021597
NCBI-ProteinID:
XP_042435657
LinkDB
All DBs
Position
9A:complement(113767955..113790403)
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AA seq
1220 aa
AA seq
DB search
MLSATVLRGCRQLRRRFAMPVAPTLLFRSFYPANPTLRPRVTSNLGPTFAPMKTGGGSTS
GVYVPPIPRRLRSMISSANGTLSAARSVDYDWRDGVGQGVALSPTSSASAALGADGYLPY
LHQQSSHYARYAYEDYPDDESDRDVEPSSASDKGASTLENVDEWKWKLSMLLRNESEQEL
VSRERKDRRDFEHLATVADRMGLCSRQYAKVIVFSKVPLPNYRPDLDDKRPQREVSIPIG
LHRQVDSLLEDYLTRKRKNLENFPSVGFSRTSSTDSFATNESLFEQQDIQTSKNIVMEKN
LRRKSFQLRNQQQNWQESPEGVKMLEFRRNLPAYKEKEALLSAISQNQVVVVSGETGCGK
TTQLPQYILESEIDAARGATCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEG
MKGRDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPE
LRLILMSATLNAELFSSYFGGSPMLHIPGFTYPVRTHFLESVLEMTGHRLTPYNQIDDYG
QDKTWKMQKQTLRKRKSQIASAVEDALVAADFREYGSQTRESLSCWNPDSIGFNLIEGVL
CHICRNERPGAVLVFMTGWDDINSLKDQLQANPLLGDPTKVLLLACHGSMASSEQRLIFD
KPENGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPAWISKAAARQ
RRGRAGRVQPGECYHLYPKCVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRA
LQSPERLSVQNAVEYLKVIGALDEKEELTILGHHLSMLPLEPKLGKMLIYGAMFNCLDPI
LTVVAGLSVRDPFLTPFDKKDLAESAKSQFSSRDYSDHLALVRAYEGWKNAEREQSGYEY
CWKNFLSAQTLKAIDSLRKQFLPLLKESGLVDDNLITCNKWHRDESLVRAVICAGLYPGV
CSVVNKAKSISLKTMDDGQVMLYFNSVNSKVAKIPYPWLVFNEKIKVNSVFLRDSTGVSD
SVLLLFGGNILRGGLDGHVKMLDGYLEFFMKPDLQSTYLSLKRELEELIQRKLVNPRMDI
QGSEDLLSAIRLLAAEDPCDGRFVVGRQELRPKAAKSLLESSSGGGDNSKNQLQTLLSRA
GHQNPTYKTKQLRNDRFRAMVEFNGMQFIGQPCNSKKLAEKDAASEALEWLKGGGPLPSS
RDTNPKSMLLKKSKKQQHYS
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgctctctgccaccgttttgcggggctgccgccagcttcgccgccgcttcgccatgcct
gtagctccgacccttctgtttcggtctttctaccctgcaaatcctacccttagacctagg
gttacctcaaaccttggtcccaccttcgcgcccatgaagaccggcggcggctccacctcc
ggtgtctacgtgccgccgatcccgcgacggctccggtccatgatcagctcggcgaacggg
accctcagcgctgcgaggtctgtcgactacgattggcgtgatggggttgggcagggagtg
gctctcagtccgacgtcctctgcgtcggctgctttgggagccgatggatatctgccttat
ttacaccagcaaagctcgcactacgccaggtatgcgtacgaggattaccctgacgacgag
tccgatcgcgacgtggagccatcatccgcgtctgacaagggtgcatcaactttggaaaat
gttgatgaatggaagtggaaactaagcatgcttctccgaaatgaaagtgagcaagaatta
gtgtcaagggaaagaaaagacaggcgtgactttgagcatcttgcaacagtggctgataga
atgggcttatgcagtcgacagtatgcaaaggtcattgtcttcagtaaggtgccattgcca
aactatagaccagaccttgatgataaaaggcctcaaagagaggtctctattcctattggt
ttgcatagacaagtagattctttacttgaggattatctcactcgaaagagaaaaaatctt
gaaaattttcctagtgttggattttccagaacaagtagcactgacagttttgctaccaat
gaaagcctttttgaacaacaagacatacaaacatctaaaaatattgtgatggagaaaaac
ctcagaaggaaaagttttcagctccgtaatcaacaacagaattggcaggaatctccagaa
ggtgtgaagatgcttgaatttcgcagaaatcttccagcttataaagaaaaggaagctttg
ttgtcagccatatctcaaaatcaggtggtggttgtttcaggtgaaacaggatgtggtaag
actacacaactacctcaatatattttagaatctgagatagatgcagcacgtggagcgacc
tgcagtattatttgtactcagcctagacgaatatcagcaatggctgtttcggagagggtt
gctgctgaaaggggagagaaattgggtgaatctgttggatataaagttcgtctggaaggc
atgaaaggaagggatactcacttacttttttgcacaacaggaatcttgttgaggagattg
ctagttgatagaaacttaaaaggtgttactcatgttattgtcgatgaaattcatgaacgt
ggaatgaatgaagatttccttctcattgttctaaaagatcttctcccccgtcgacctgaa
cttaggttaattttgatgagtgcgactctgaatgctgaattgttctcttcctactttggc
ggttctccaatgctgcacatccctggttttacctatccagttcgtacacattttttggag
agtgttctggaaatgactggccataggttgaccccatacaatcaaattgatgattatggc
caagataaaacgtggaaaatgcagaaacaaactctcaggaaaaggaaaagccagattgct
tctgctgttgaggatgccttagtggctgcagatttcagggagtatggttcacagactcgt
gagtcactatcttgttggaatccagattccattggttttaaccttatagaaggtgttctt
tgccatatttgtcggaatgaaaggcctggtgcagttttggtgtttatgactggttgggat
gacatcaactctctcaaagatcagttgcaagctaatcctcttcttggagatcctacaaag
gttctacttctcgcatgccatggctcaatggctagttcagagcagaggttaatatttgat
aaacctgaaaatggtgtgaggaaaatagttcttgcaactaacatggctgagacaagtatc
acaatcaatgatgtggtttttgttgtcgattgtggaaaggcaaaggagacttcatatgat
gctctaaataacaccccttgtttgcttccagcctggatttccaaggcagctgctagacaa
agaagagggagagctggtcgtgtacagcctggggagtgctatcacctttatccaaaatgt
gtctatgatgcatttgctgattaccaattacctgagcttttaaggacacccttacaatct
ctttgcctgcaaatcaaaagtcttcgtcttggaagcatatctgagttcttatccagggca
ttgcagtcaccagaacgtctttcagttcaaaatgccgttgaatatcttaaagtaattggt
gcattggatgagaaggaagaattgaccattctaggacatcacttgtcaatgcttccgttg
gaacccaaattgggaaaaatgcttatttatggagctatgttcaactgtcttgatcctata
ttgactgttgttgctggtctaagtgttagagatccatttttgacgccctttgataagaaa
gatttggcagaatctgcaaaatctcagttttcttcccgtgattatagtgatcatcttgct
ttggttcgagcttatgagggatggaagaatgcagaaagagagcagtctggatacgaatat
tgctggaagaactttctttcagcacaaactttgaaagctattgattctcttcgaaagcag
tttcttcctcttctgaaggaatctggtcttgttgatgataatttaattacttgcaacaaa
tggcatcgagatgaaagccttgtccgtgctgtaatatgtgctggcttatatccaggggtc
tgttctgttgttaacaaggcaaagtctatatctttgaagacaatggatgatggtcaagtt
atgctttactttaattcagttaatagcaaggtggcaaagattccatatccatggctagtt
ttcaacgagaagattaaggttaattctgtgtttcttcgggattcaactggtgtatctgat
tctgtactgctgctctttgggggaaacattttgcgaggcggacttgatggtcacgtgaag
atgttggatggttacctggaattcttcatgaagcccgacctacaatcaacttatcttagt
ctcaaaagagagctcgaagaacttattcaacgcaaacttgtcaatcctagaatggacata
cagggcagtgaggatctcctttcagcaattagattgctagcagcagaagatccttgcgat
ggtcgttttgtcgttggtcgacaggagctgagaccaaaggcagcaaagtccctgcttgaa
agcagctcaggtggtggtgataactccaagaaccaattgcagacattgctcagcagagct
gggcaccagaaccctacttacaagacaaagcaactcaggaatgatcgtttccgagcgatg
gttgagttcaatggaatgcagtttattgggcaaccttgtaacagcaagaaacttgcggag
aaggatgctgcatcggaagccttggagtggctcaagggtggtggcccattgcctagttca
agggacaccaatcccaaatccatgctgctcaaaaaaagtaaaaagcaacaacactacagt
taa
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