Zingiber officinale (ginger): 122022272
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Entry
122022272 CDS
T08725
Name
(RefSeq) probable helicase CHR10 isoform X1
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122022272
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122022272
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
122022272
NCBI-ProteinID:
XP_042436162
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Position
9B:83064556..83078266
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AA seq
878 aa
AA seq
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MDYERRLLLAANLVLSSDRSYEPPPEPYELGITAVLKPHQIEGLSWLIRRYHLGVNVVLG
DEMGLGKTLQAISFLSYLKAQSLSCGPFLVMCPLSVTDGWMSEFNKFCSTLRVILYVGDK
KHRHNLRNSMHETLQRQSSSSNELPFDVLLTTYDITLLDQDFLSQIPWGYAVIDEAQRLK
NPSSVLYNVLEHNFVMPRRLLLTGTPIQNNLSELWALMHFCMPSIFGTSDQFISTFKEAG
SSSAGTESYSVKRQFRILRYILNAFMLRRTKALLVERGTLTLPPVTEMTVMVPLIPLQRK
VYMSILRKELQTLLSLSLGSTSNQSLQNIVMQLRKTCSHPYLFSGIEPEPYEEGEHLIQA
SGKLIILDLLLLKLHKFGHRVLLFAQMTRTLDILQDFMELRKYSYERLDGSVRSEERFAA
IRSFSYQASKDDSNNQVNHDVPFVFMISTRAGGVGLNLIAADTVIFYEQDWNPQVDKQAL
QRAHRIGQMKHVLAINLVTQHTIEEAIMRRAERKLWLSSNVVQQQDEVYGTGKDIVAEEG
DMKSLIIGLHMFDPTDMNKDSIDANSMVELNNMTDKVVEMRFHEIPEKDVRKFEINKKEI
LKSHDKLVNSSESSAFDFRVDEASYMSWVQKFKDASLSEESLNLEQGKRRHLPEEYQQKR
EADKKKAEEKQLGRWEALGYKTLAVEEPNMLVEISVLSDQGAVQFVYGDCTNPSKVCQSE
PAIIFSCVDNSGNWGHGGMFNSLANLSSYIPDAYHRAFECGDLHMGDLHLIKLNASSGDE
SIVQHCPMWVALAVVQSYNPRRKVPRSNISMSDLEGCLSKASFAAAQNSASIHMPRIGYQ
DGSQHSEWYTMERLLRKYASMHGINIYVYYYRRPSRDQ
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggactacgagcggcgcctcctcctcgcggcgaacctcgtcctttccagcgaccgcagc
tacgagcctcctccggagccatacgagctaggcatcacggctgtcctcaagccgcaccaa
atcgaaggcctttcctggctcatccgtcgctaccacctcggcgtcaacgtcgtgctcgga
gacgagatgggtcttggcaagactttacaagctatttctttcttaagctatctgaaggca
caatcattatcatgtggccccttcttggttatgtgtccgctaagtgttacagatggttgg
atgtcagagtttaacaaattttgttcgacccttagagttatcctttatgtcggtgacaag
aaacatcgtcacaaccttcggaattcaatgcatgaaactttgcagaggcagtcctcatca
tctaatgagttaccttttgatgttcttttgacaacatatgatataaccttactggatcag
gattttctttctcaaattccttggggttatgctgtgattgatgaagctcagcggttgaag
aatccttctagtgttttgtataatgtacttgagcataattttgttatgccaagacgcttg
ttgttgacaggcacaccaattcaaaacaatctttcagaactttgggctctgatgcacttt
tgcatgccttctattttcgggacttcagaccaatttatttcaacattcaaggaagctgga
agttcttcagcaggtaccgaatcatattcagtaaaaaggcaattcaggattcttagatac
atattgaatgcatttatgctccgaaggacaaaagcattacttgttgaaagagggactctt
actttgcctcctgttactgagatgacagtgatggtacctctcatccctttgcaaaggaag
gtgtacatgtcaatattgaggaaggaacttcagacacttctctcactttcactaggaagt
actagcaatcagtctttgcagaatatagtaatgcaacttaggaaaacgtgtagtcatcca
tatctcttttctggcattgaaccagagccatatgaagaaggtgaacatctgattcaggct
agtgggaagcttattattctagacctgcttctcctgaaactccataaatttggacatcga
gttctgttgtttgctcagatgactcgaactcttgacattctacaggacttcatggaattg
cgcaagtattcttatgagcggcttgatggatctgtacgttctgaggagagatttgctgct
ataaggagctttagttaccaagcatccaaagatgactcgaataatcaagttaatcatgat
gttccatttgtttttatgatctcaactagagctgggggagttggtcttaatctcatagct
gctgatactgtaatattttatgagcaagactggaatcctcaagtagacaagcaggcattg
cagcgtgcccatcgcattggtcaaatgaagcatgtgcttgccataaatctagtaacacaa
catactattgaagaggcaattatgaggagagcagagagaaaactttggctaagtagtaat
gtagtccagcaacaagatgaagtatatggcacaggaaaggatattgtagctgaagagggt
gacatgaagtctctcattataggcttacacatgtttgatcccacagatatgaacaaggac
tccattgatgcgaatagtatggttgaactcaataatatgactgacaaagtggttgaaatg
cgttttcatgagataccagaaaaggatgttcgtaaatttgaaattaataaaaaggagatt
ttgaaaagccatgataagttagttaactcttctgaatcttctgcttttgattttagagtt
gacgaggcttcatatatgtcttgggttcagaaatttaaagatgcttcactttctgaagaa
tctttaaatttggagcaggggaagaggaggcatctgccagaagagtatcaacagaaacgt
gaagctgacaagaaaaaagcagaggagaaacagttgggaagatgggaggcacttggttat
aagacattagctgttgaagagcccaatatgttagtagaaataagtgttttgtctgatcaa
ggggctgtccagtttgtatatggagattgcactaacccatcaaaagtctgccaatcagag
cctgcaataatttttagctgtgttgacaactcagggaactggggacatggtggcatgttc
aattcgcttgctaatctttcatcatacatcccagatgcttaccaccgtgcttttgaatgt
ggtgacctgcatatgggggatttacacttaataaagttgaatgcttccagtggtgatgaa
agcattgtccaacattgccctatgtgggttgcccttgctgtggttcaatcttataatcca
agaaggaaagttcctaggagtaacatctctatgtctgatcttgaagggtgcttgtctaag
gcatcatttgcagctgctcaaaattcagcctctattcatatgccacgaattggttaccaa
gatggatctcaacactctgaatggtacacgatggaacgccttctacggaaatatgcttca
atgcatggcatcaatatctatgtatattattaccgtcgcccatcgagagatcaataa
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