Zingiber officinale (ginger): 122022654
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Entry
122022654 CDS
T08725
Name
(RefSeq) retinoblastoma-related protein-like isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122022654
Transcription factors [BR:
zof03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
122022654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
Rb_C
Motif
Other DBs
NCBI-GeneID:
122022654
NCBI-ProteinID:
XP_042436638
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All DBs
Position
9B:complement(114462120..114472804)
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AA seq
1008 aa
AA seq
DB search
MEDVKPSIASLADDRGAMEARFADLLKSKLTLDESIVRQAIVLFKESKHILLANMSAIGS
GSPEEIERFWSAFVLYSVTKLSKGRFKQDKDANCITLCQILRIFKLNVVDFFKEMPQFCL
KAGHILSGLYGLDWEKRLEVKELQANIVHLCLLSRYYKRAYQELFMQTDSNNGHDSAISA
GSKGCISDYHQFGWLLFLALRMHAFGHFKDLVTCTNGLVSILAILILHVPIHARMFRIQD
SPIFAKKSDKGVNLLASLCDKYDASEDELRRILEMTNNLIVDILKKKPCAASDVKSECLA
YIDTAGLTYFDELLGEKSLQSNILIFEKNYNDAILKGELDERMFVNDEDSLIGSGSLSGG
VINMCGTKRKYDIFASPAKSITGPMSPPCSPGSPLNRSLIGCSKLAPVTPVSSAMTMAKW
LRNIISPLPSKPSAELLHFLSTCDKDLTSDITQRASIILGAIFPCSSFGDRCTSGGMQSA
AQMDSLWAEQRKLEALKLYYRVLEAMCRAESHILHGSNLTSLLSNERFHRCMLACSAELV
LTAHKTVSLMFPAVLEKTGITAFDLSKVIESFVRHEESLPRELKRHLNSLEERLLESMAW
EKGSTMYNSLVVARPSLSPEINRLGLLAEPMPSLDTIAENCNVSAGGFQLPFQKCEHAID
QNRDPRSPKKACNEYRNVLIERNFLASPSKDRSFNSPKSKAPPLQSSFASPTRPSPTGGG
ETCAEAGINIFFSKITKLAAIRIKSLSERLQLSQQISEHVYFLIQQILAHRTVLFFNRHI
DQLILCCFYGVAKIFQLSLTFKEIIYNYRKQPQCKPQVFRSVFIHWPSTSRSGKTGQEHV
DIITFYNEVFVPSVKPLLVELGSTGVSSRSKKSTEEKISSDSQIPGSPMLSSFPHLPDMS
PKKVSAVHNVYVSPLRSSKIDALLSPSSKSYYACVGESTHAFQSPSKDLSAINNRLNCGR
KVNGRLNFDVVSDFVVARSLQNGGPVSPGTAAPAPVVNIAVKAEQPDS
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgtgaagccgtcgattgcgtcgcttgcggacgaccgtggtgcgatggaagct
cgatttgctgatctgctgaagagcaagctgactcttgacgagagtatagttaggcaggca
atagttctattcaaggaaagcaaacacatcctcttggcaaatatgtcagcaataggaagt
ggatcgcctgaggagatcgagaggttttggtctgcatttgtactgtacagtgtgacgaag
ctcagcaagggaagatttaagcaagataaggatgcaaattgcatcaccctctgtcagata
ctcagaatatttaagctgaatgttgtggatttctttaaagagatgccacaattttgtctg
aaggcaggccacattttaagtggtttgtatggcttagattgggagaagaggcttgaggta
aaagagctacaggcaaacattgtccacttgtgtcttcttagcaggtactataaacgggca
taccaggagttgttcatgcaaactgattcaaataatggtcatgattcagcgatttctgct
ggttcaaagggatgcatttctgattaccatcaatttggatggttgttatttttagctctt
cgtatgcatgcatttggtcacttcaaggatcttgtgacgtgtactaatggattagtttca
atactggctatacttattcttcatgtgcccatccatgccaggatgtttagaattcaagat
tcaccaatttttgctaaaaaatctgacaaaggtgtcaaccttttggcctctctatgtgac
aaatatgatgcttcggaggatgaattgagaagaatattggaaatgacaaataacttgata
gtggatatcttgaagaaaaaaccatgcgcagcttcagatgtaaagagtgaatgcctggct
tacattgacacagctggtttgacctattttgatgaactattgggggaaaaatcactacag
tcaaatatacttatctttgagaaaaattacaatgatgcaatccttaaaggagaactggat
gagagaatgtttgttaatgatgaggacagtctaattggcagtggaagcttgtctggaggt
gtcattaacatgtgcggaacaaagagaaagtatgacatatttgcttcaccagcaaagtcc
attaccggcccaatgtctcctccatgttctcctggttcacccttgaacagaagtcttatt
gggtgcagtaagttggctcctgttacgccagttagctctgccatgactatggcaaagtgg
cttcgaaacattatatctcctcttccttcaaaaccttcagcagagcttctacatttcctt
tcaacatgtgacaaggatttaacgagtgatattacacaacgggccagcattattcttgga
gcaatttttccatgttcttcatttggagataggtgtacttcgggaggtatgcaaagtgct
gctcagatggatagcttatgggccgagcagagaaagttggaggcacttaagttatactac
agggttttggaggcaatgtgtagagcagagtcacatattcttcatggaagtaatcttact
tcattgttatcaaatgaacggtttcaccgttgcatgcttgcttgttcagctgaactggtt
ttgactgcacataaaactgtttctttgatgtttcctgctgttttggagaaaactggcatt
acagcttttgatttgagtaaggtaattgaaagttttgtccgccatgaagaaagtcttcca
cgggagttaaaacgacatttaaattccttagaagagaggctattagaaagcatggcatgg
gaaaaaggttccacaatgtacaattctttggtagtagcaagaccatctctctctccagaa
ataaatcgtttaggactattagctgaaccaatgccttctctggatactattgctgagaat
tgtaatgtttctgctggaggctttcagttacctttccagaagtgtgagcatgccattgac
caaaacagggatcccagatctcccaagaaagcatgcaatgaatacagaaatgtgcttata
gaacgcaatttcctagcatcgccgtccaaggatcgttccttcaacagtcccaaatctaaa
gcacctcctctgcagtcttcttttgcaagtccaacacgtccaagtcccactggaggaggg
gaaacttgtgctgaagcagggatcaacatcttttttagtaagatcacaaagctggcagcc
atcagaatcaaaagtttgagtgaaaggcttcagttgtcccagcaaatctcggaacatgtc
tattttctcattcagcagatccttgctcatcgtactgtcctatttttcaatcgacatatt
gatcagttaattctttgttgcttctatggagttgctaagatttttcaactcagcttaacc
tttaaagagatcatctacaactacagaaagcagccacaatgcaaacctcaagtctttcga
agtgttttcattcactggccatcaactagccgaagcggaaagacaggacaggagcatgta
gatattattaccttttacaatgaggtatttgttccttctgtgaagcccttgttggttgaa
ctggggtcaaccggtgtgagtagcagaagcaagaaatccactgaagagaaaattagttct
gatagccaaattccagggtcacctatgttgtcctcatttccacaccttccagacatgtca
ccaaagaaagtttctgctgtccacaatgtttatgtttcccctctgcgatcatcaaagatc
gatgccttgctctcaccgagttcaaagagttactatgcatgtgttggcgaaagtacacat
gctttccagagtccttcaaaagatctgtcagccatcaataatcgtttaaactgtggaaga
aaggtcaatggcagactcaactttgatgtggtaagcgactttgttgttgctaggagtctc
caaaacggtggtcctgtctctccaggaactgctgctccagctcctgtagtaaacatagct
gtaaaagcagagcaacctgatagttga
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