Zingiber officinale (ginger): 122022662
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Entry
122022662 CDS
T08725
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like isoform X1
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122022662
03036 Chromosome and associated proteins [BR:
zof03036
]
122022662
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122022662
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
122022662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
RRM_1
TPR_14
UTP6_C
NRDE-2
xRRM
Motif
Other DBs
NCBI-GeneID:
122022662
NCBI-ProteinID:
XP_042436650
LinkDB
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Position
9B:complement(112485047..112517469)
Genome browser
AA seq
809 aa
AA seq
DB search
MEKSLEEPENGNPSSPLSSSSSDDDEAAEDLQIQTLEKSLAENPFEYGTYVQYIQCLRKY
GHLEKLRQARESMNQRFPLSPEMWQEWIKDEISLCSSVEAFTEVEKLYERAVQEYLSVSL
WCDYINFVQENDASISQCSPDGVSKMRKLLERAVAAAGLIVTEGNKIWEAYREFEQALCL
TIKDSQNEEKEKQNDIVRKLYHRQLSLPLVDLRATLRDYKLWEAEQGHDNDANSDFDGVP
QHVVSAYRKATELYNFRKQYEEEIMKTDASDTERLQQFLNYIKFEESSGDPVRIQILYER
AVSRFPVSSDLWLGYTSYLDQNLKVPTILRSVYSRATRNCTWVGELWVRYLLSLERMHAT
EKELSDVFEQAVQCAFTSFKEYLDLFLTRVDGLRRRMSLAEAKKDGLDYTIIRETLQRAT
EYLSPDCLSTDELLCLHSYWARLEVSLGKDIGAACGVWENLLKKRGTMLEVWQSYITMEL
ELGQINEARSIYRRCYTKRFSGTGSEDICYSWLRFERENGTLEDYDTAQKKVAPRLKELK
AFRAQQEAKSDNASLVKQDNPTAVDTSRKRKIGKVSESKPPPEKRKKYSSEPSETSEKVP
AKATDQINIAKETDEGETNNLLDTTSKQSVRTSEHRDSKPELYNDKCTAFISNLSFEANE
EHLRKFFKDSGGVVAIRLLKDKITRQSRGLAYIDFSDDEHLAAAVAKNKQKLLGKKLSIA
RSDPKRSQKRDSASSNSSTTHKIPFGSKMTRGNSDKKDVSAAFVVAKHGGKEFTGSVTFA
VPRALAQRLEHTPKDAKPDQASEQPKSND
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggagaaatccctcgaggagccggagaacgggaaccctagctcccccctctcctcttcc
tcgtcggacgatgacgaagccgccgaagatctccagattcaaaccctagagaagtctctc
gccgagaatcccttcgagtacggtacctacgtccagtatattcaatgtttgcgcaagtat
ggtcatctcgagaagctgcggcaggcgagggaatcaatgaaccagcggttccctttaagc
ccggagatgtggcaggagtggattaaagacgaaatttccttgtgctcgagtgttgaagct
ttcactgaagttgaaaagctttatgaacgtgcagtgcaagaatatttgtctgtatctctt
tggtgtgattacatcaattttgttcaagaaaatgatgcttctatatcacaatgttcaccg
gatggtgtttcaaagatgagaaagttacttgagcgtgctgtcgctgctgctgggttgatt
gtaactgaaggaaataaaatatgggaggcatacagagaatttgagcaagctctttgtctg
acaataaaggacagtcaaaatgaggagaaagaaaaacaaaatgacattgtacgcaaacta
taccatcgacaactatctctacctttggttgatttaagggcaacacttagggattacaag
ctttgggaggctgaacaaggccatgataatgatgcaaactcagattttgatggtgttcct
cagcatgttgtctcggcttataggaaggccactgagctttataattttcgtaagcaatat
gaagaggaaatcatgaaaactgatgcatctgacacagaaagacttcaacagttcttgaat
tacataaagttcgaggaatcatctggtgaccctgttcgtattcaaatcctttatgagcgt
gctgtctcaaggtttccagtatctagtgacttatggctaggatacactagttatttggat
caaaatttgaaggtccccactattctgagaagcgtatattcaagagccacaagaaattgc
acgtgggttggtgaactctgggtgcgctacttgctttctttggaacgtatgcacgcaaca
gagaaagagttaagcgatgtctttgaacaagcagtgcaatgtgctttcacaagtttcaaa
gagtatttggatctatttctcactcgagtagatggtttaagacggcgaatgtctttggct
gaagctaagaaggatgggctagactataccataataagagagactctccagcgtgctact
gagtacttatctccagattgtctgagtacagatgaactgttgtgtcttcactcgtattgg
gcaagattggaggttagtcttggaaaggatattggtgctgcatgtggggtatgggaaaac
ttgctcaagaagaggggaactatgctggaagtttggcaatcatatatcacaatggaactt
gaactgggtcaaataaatgaggcaagatcaatctaccgaaggtgttacactaaaaggttc
tcgggaacaggttcagaggacatttgctattcctggttgcgttttgaaagggaaaatggc
actttggaggattatgacactgcacaaaaaaaggtagcgccgcgcttaaaggagctaaag
gcattccgggctcaacaggaggccaagagtgacaatgcatcacttgtcaagcaggataat
cctactgcagttgatacatcacgaaagaggaaaataggtaaagtatctgaaagtaaacca
cctcctgagaagcgaaaaaaatattcatctgaaccttcagaaacatctgaaaaagtgcct
gcaaaagcaacagaccagattaacattgcaaaagaaactgatgaaggtgaaacaaataat
ttgcttgatacaaccagcaagcaatctgtcagaacttcagaacatcgggattccaaacct
gagttgtataacgataagtgtactgcatttatctcaaatctcagctttgaggcaaacgag
gaacatttgcgcaaattcttcaaagactctggaggagttgttgctatacgattgcttaaa
gataaaataacaagacaatcaaggggattagcctacattgatttttcagatgacgaacat
cttgcagcagctgttgccaagaacaagcagaagttgcttggaaagaaattaagtattgca
cgatcagatcctaagagaagccaaaagagggactcagctagtagcaattcatccacaact
cataaaattccatttggttcaaagatgactcgaggtaacagtgacaagaaagatgtgtct
gcagcttttgttgtagctaagcatggtggcaaggagttcactggaagtgttacttttgct
gtacccagagcgttagcacagcgccttgaacacactccaaaggatgcaaagcctgatcaa
gctagtgagcagccaaaatcaaatgattaa
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