KEGG   Zingiber officinale (ginger): 122022705
Entry
122022705         CDS       T08725                                 
Name
(RefSeq) cullin-4-like
  KO
K10609  cullin 4
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03420  Nucleotide excision repair
zof04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122022705
  09124 Replication and repair
   03420 Nucleotide excision repair
    122022705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    122022705
   03400 DNA repair and recombination proteins [BR:zof03400]
    122022705
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:zof04147]
    122022705
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     122022705
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      122022705
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      122022705
Exosome [BR:zof04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   122022705
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 122022705
NCBI-ProteinID: XP_042436708
LinkDB
Position
9B:38531694..38547814
AA seq 842 aa
MTQQKRAFSGSRSSGGGGGAGTTRNSNQSSGASCSATPVSTDCSDPMKKAKSQPVDACSL
DQEKNGLQRRFDTDVPPRPAEEDDTMIIEQEELKPGSPAPAAMTGVAANLSRKKATPLQP
PTTKKLVIKSFKIKPSLPANFEEDTWATLKSAITAIFLKRPDPCDCEKLYQAVSNLCLHK
MGGSLYQRIEEECEMHISMALSSLVGQSPDLVVFLSLVEKCWQDFCNQMLTIRGIALVLD
RTYVMQSPNVCSLWDMGLQLFRKHLTSSQEVEHKVVTGLLRLIEKERQGEAIGRTILSHL
LKMFTALGIYTDSFEKPFLQDTSEFYASEGVKYMQQSDVPDYLKHVDLRLHEEHERCLIY
LDATTRKPLVATAEKQLLERHTSAILEKGFTMLMEANRIDDLQRMYTLFQKVNALELIKQ
ALSSYIRGTGQAVIMDEEKDKDLVSYLLEFKTSLDKILEESFFKNEVFSNTIKDSFEHLI
NLRQNRPAELIAKFVDEKLRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYKKDLA
KRLLLGKSASIDAEKSMITKLKTECGSQFTNKLEGMFKDIGLSKEINDSFKQSSQARTKL
PTGIEMSVHVLTTGYWPTYPPMDIRLPHELNVYQDIFKEFYLSKYHGRRLMWQNSLGHCV
LKAEFPKGKKELSVSLFQAVVLMLFNDTQKLNFQDIKDATGIDDKELRRTLQSLACGKVR
VLQKSPKGREIEDEDSFVFNEEFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVD
AAIVRVMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY
LA
NT seq 2529 nt   +upstreamnt  +downstreamnt
atgactcagcagaagagggccttctccggcagcagaagcagcggcggcggcggcggggcc
ggaaccaccaggaacagcaaccaaagcagcggagcctcctgcagcgccaccccggtttcc
acggactgctctgaccctatgaagaaagccaaatcccagccggtcgatgcctgctccttg
gaccaggagaagaacggcctgcaacgccgcttcgacaccgacgtgcctccgcggcctgcg
gaggaggacgacacgatgatcatcgaacaggaggagctgaagcctgggtctccagcccct
gctgctatgacgggggttgctgcgaatctatccaggaaaaaggctacacctctccagccg
ccgactaccaagaagttagtcatcaagtcattcaaaatcaaaccctcacttcccgctaac
tttgaggaggatacatgggcaacattgaagtcagctatcactgctatatttttgaagaga
ccagatccctgtgactgtgaaaaactctatcaggctgtcagcaatctttgcttgcataag
atgggagggagtctttaccaacgaatagaggaggaatgtgaaatgcacatttctatggca
ttgtcatcattggttggccagagtcctgatttggtggtatttttgtcactggtggagaaa
tgctggcaggacttctgtaaccagatgttgaccatacgtggcattgctttagtacttgat
agaacatatgttatgcaaagtccaaatgtctgctcattgtgggacatgggtttgcagctg
ttcaggaagcacctcacctcatctcaggaggtagagcacaaagttgtcacaggacttctg
aggttaattgaaaaggagaggcaaggtgaagctattggtaggactatcctgagtcatctt
ttgaagatgtttactgcactaggaatttacactgatagctttgagaaaccatttcttcaa
gacacttctgaattttatgcatctgaaggtgtgaaatatatgcaacagtcagatgttcca
gattatttgaaacatgttgatttgaggttacatgaggagcatgaaagatgtttgatatac
ttggatgctactacaaggaagccccttgtagcaactgcagaaaaacaacttcttgaacgt
catacttctgcaattctagagaagggattcacgatgcttatggaagcaaaccgtattgat
gaccttcagagaatgtataccctatttcagaaggttaatgctctcgagttaataaaacaa
gctcttagctcatatattcgtggtactggccaagctgttatcatggatgaagagaaagac
aaagatctcgtttcctacctcttagagtttaaaacatctctggacaagatactagaagaa
agtttcttcaaaaatgaagttttctctaataccataaaggattcatttgagcatctgatt
aatcttcgtcagaataggccagctgaattgattgccaagtttgtggatgagaagctccgt
gctggcaacaagggtacatctgaagaagagttggagggtatactcgacaaagttttggtg
ttattcagatttatacaagggaaagatgtatttgaggcattttacaagaaagatcttgca
aaaagattattgttgggaaagagtgcatcaattgatgctgagaagtcaatgatcacaaaa
ctgaaaactgagtgtggcagccaatttacaaataaactcgagggaatgtttaaggacatc
gggttatcaaaagaaataaatgactcctttaaacagtcatctcaagctaggacaaagctt
ccaactggtattgaaatgagtgttcatgtcctgacaaccggatattggcccacatatcca
cctatggatattcggcttcctcatgagctgaatgtctatcaggacatatttaaagagttc
tatttgagtaagtaccatgggaggcgtttaatgtggcagaattcattaggccattgtgtt
ctgaaagcagaatttccaaaagggaaaaaagaattgtcagtgtcattgttccaggcagtt
gttctcatgcttttcaatgacactcaaaagctgaattttcaagacattaaagacgctaca
ggcattgatgataaagagttgaggaggactttacaatcattagcatgtggcaaagttcga
gtgctacagaagtcccccaaaggaagagagattgaagatgaggattcttttgtgttcaac
gaagaatttaccgctccattatatcgtataaaggtaaatgcaatccaaatgaaagagaca
gtggaggagaatacaagcaccaccgaaagagtattccaagatcgtcagtatcaggttgat
gcagctattgttcgtgttatgaagacaaggaaagtacttagtcacacactgctaattacc
gaactctttcagcagcttaagtttccgataaagcccgcggacttgaagaagaggatagag
agccttattgacagggaatacttggagagggacaagaacaatccgcagatttacaactac
ttggcatga

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