Zingiber officinale (ginger): 122022706
Help
Entry
122022706 CDS
T08725
Name
(RefSeq) transport inhibitor response 1-like protein Os04g0395600
KO
K27740
protein auxin signaling F-box 2/3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122022706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_NXF1-5
F-box
HcyBio
Motif
Other DBs
NCBI-GeneID:
122022706
NCBI-ProteinID:
XP_042436713
LinkDB
All DBs
Position
1A:complement(31693974..31697717)
Genome browser
AA seq
575 aa
AA seq
DB search
MTYFPDEVVEHIFDFLSSHRDRNNVSTVCKAWYLVEQLSRLRVFVGNCYAVRPERVMARF
PGMKCLTVKGKPHFADFNLVPHDWGGDALPWIETAARCCPGLEELRLKRMVVSDESLELL
ARAFPNFKSLVLISCEGFSTDGLAEIATHCRGLRELDLQENEVEDHGRQWLSCFPDSCTS
LVSLNFACLKGEVNTSALERLVARCQNLRCLKLNRAISIESLIKILARAPNLVELGTGSF
TADHRTEAYQNLLNAFYKCNSIRNLSGFWDAAPRYLQAIYSICSSLTVLNLSYAPAIQVN
DLIKMIRHCFKLQKLWVLDSIGDKGLAAVACACKELQELRVFPSDVYGTGIAAVTEEGLV
AISSGCPKLNSLLYFCHQMTNAALITVAKNCPHFTRFRLCILDPVKPDPISNEPLDEGFG
AIVKSCKDLKRLSLSGLLTDKVFLYIGMYASRLEMLSIAFAGESDKGMVYVLNGCKNLKK
LEIRDSPFGDAALLENVGKYETMRSLWMSSCDVTQGGCKALAAKMPRLNVEVINEREESD
EMVENPSDMHRVEKMYVYRTLTGPRDDAPDFVWTF
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgacttacttcccggatgaggtggtggagcacatctttgacttcctcagctcgcatcga
gaccgtaataatgtatccacagtgtgcaaggcgtggtatcttgtggagcagcttagccgc
ttgcgtgtattcgtcggcaactgttatgccgtccggcctgaacgagtaatggctagattc
cctggaatgaagtgcctcaccgtcaaggggaagccccattttgctgatttcaacctggtt
ccccacgattggggcggcgatgcgctaccgtggattgagacggctgcacgttgttgccct
ggtttggaggagctccgactgaagaggatggtggtctcggatgaaagcctggagcttcta
gcccgcgctttccccaactttaagtctcttgttctaattagctgcgaggggttcagcact
gatgggcttgctgagatcgctactcactgcaggggtcttagggagttagatttacaggaa
aatgaagtggaagatcatggccggcagtggctaagttgtttccctgattcctgtacttcc
ttggtatctctaaacttcgcatgtctaaaaggagaggtgaatacaagtgcccttgagcga
cttgttgctaggtgccagaacctcaggtgcttgaagcttaatcgagcaatatctattgag
tcacttatcaagatacttgcccgagcccccaatttggtggaacttggaactggttctttc
acagctgaccaccgcaccgaagcttatcagaatctattaaatgccttctacaaatgcaat
tctataaggaatttgtcaggtttctgggatgctgctcctcgctacctgcaggccatatat
tccatctgttcaagccttactgtccttaacttaagctatgcccctgcaatccaggttaat
gatctaataaagatgattcgtcactgtttcaaacttcaaaaactctgggttttagattca
attggagacaaaggcttagcagccgttgcctgtgcttgtaaagagttacaggagttgagg
gtatttccatcggacgtatatggtactggcattgctgctgtaactgaagaagggcttgtt
gctatatcttcaggctgccctaagttgaactctttactgtatttctgccaccagatgaca
aatgctgcacttatcacagttgccaagaactgcccgcatttcacacggttcagattgtgt
attcttgatcctgtaaagccagatcccatcagtaacgaaccattggatgaaggttttggg
gcaattgtgaagtcatgcaaagatctgaagagactatcattatcaggccttctaactgac
aaggttttcttgtatataggcatgtatgcttcgcgtcttgagatgctttcaattgcattt
gctggtgaaagtgacaaaggaatggtttatgtgctcaatggatgcaagaaccttaaaaag
cttgaaatcagagacagtccatttggtgatgctgcacttttggagaatgtagggaagtat
gaaacaatgcgatccctttggatgtcatcttgtgatgttacccaagggggttgcaaggca
ctcgctgcaaagatgccaagattaaacgttgaagtcataaacgagagggaagaaagtgat
gagatggtggaaaatcctagtgacatgcacagagtggaaaagatgtatgtgtatcgaact
ctgacagggccaagggacgatgcaccagattttgtctggacattttag
DBGET
integrated database retrieval system
