Zingiber officinale (ginger): 122022711
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Entry
122022711 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122022711
03036 Chromosome and associated proteins [BR:
zof03036
]
122022711
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122022711
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
122022711
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122022711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
P-loop_SecA
Cas3-like_C_2
GRP
Motif
Other DBs
NCBI-GeneID:
122022711
NCBI-ProteinID:
XP_042436718
LinkDB
All DBs
Position
9B:complement(15483345..15487501)
Genome browser
AA seq
685 aa
AA seq
DB search
MPSLLSDPLSSEGLKKSKHKKAKEQSSPLEQEDIGKMKIKKSRKRKADEEDKSDIVTDSS
PEVPEKKKKKPEANGLAVKKLKGEETVEPESGSDVDDPNALSNFRISKTLVETLNSRGIK
ALFPIQAMTFDLILDGFDLVGRARTGQGKTLAFVLPMLESLINGRIKASRKTGYGRPPSV
LVLLPTRELAVQVHSDFEVYGGAVGLSSCCVYGGAPFRAQELSIKRGVDIVVGTPGRVKD
HLERGTLDLRALNFRVLDEADEMLRMGFVEDVELILGKVEDASKVQTLLFSATLPDWVKE
ISARFLKADKKTADLVGNEKLKASASVRHLALPCLKSTRQQILPDIIRCYSSGGRTIIFT
ETKESASELSGLLPGSRALHGDVMQQQREVILTGFRSGKFLVLVATNVAARGLDINDVQL
IIQCEPPRDVEAYIHRSGRTGRAGNTGVAILLYEPKYKFSVSRIERESGVKFEHISAPQP
ADIAESVGSEAANAISSVSDSVIPVFRSQAEELLNSSGLPAVDLLAKALAKAAGFLDIKK
RSLLSSLENYVTLHLQTGNTIYSPSFVFSVLGRYLPQEKVQNLESVSITADSYGVVFDVP
ADDVNEFLEVQDKAGTFTVEVLETLPPLQDRYHKGPNSGRGRFGRGGGGFHGGQRGGGFS
SGRGGSNRGGRGRGGGGRNNFFQRN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgccttctctcctctccgaccctctttcctccgaggggctcaagaaatcgaagcataag
aaggcgaaggagcaaagctcccccttagagcaggaggacataggtaaaatgaagatcaag
aagagcaggaagaggaaagccgacgaggaggataagagcgacatcgtgactgattcctcg
ccggaggttcctgagaagaagaagaaaaagccggaagctaatggtctggcagtcaaaaag
ctaaagggcgaggagacggttgagcctgagagcggtagcgatgtggacgacccgaatgcc
ttgtccaattttaggatctcgaagaccttggtggagaccttaaattcgaggggcataaag
gccctgtttcccatccaggccatgactttcgatctaatactcgatgggtttgatttagta
ggtcgtgcgcggactggtcagggaaaaacgttggcttttgttttgcctatgttggagtca
ttgataaatggaaggatcaaggcttcaaggaagactggctacggaagacctccaagtgtt
ttggtactacttccaactcgagagcttgcagttcaggtacactcagactttgaagtctat
ggtggcgcagtagggttatcttcatgttgtgtgtatggtggagctcctttccgtgctcaa
gaattgtccataaagagaggggttgatattgtagttggaactccaggacgtgtgaaagat
catctagagagaggaactcttgacttgagagctttaaacttccgtgtccttgatgaagca
gatgaaatgttgagaatgggttttgtggaggatgttgaactaattctcggtaaagttgag
gatgctagcaaagttcaaacacttctcttcagtgctaccttgcctgattgggtgaaagag
atttcagcaagatttctaaaggcagataagaaaacagctgatcttgttggcaatgagaaa
ctgaaggctagtgccagtgttcgacatcttgctcttccttgtttaaaatcaacaagacaa
caaattcttcctgatattatccgttgctatagcagtggtgggcgaaccattattttcact
gagacaaaagaatctgcatctgagctttctggattattacctgggtcaagagcattgcat
ggagatgtaatgcaacagcagcgagaagtcattctaacaggatttaggtcaggcaagttt
ttggttttggttgcaacaaatgttgcagcacgtgggcttgacatcaatgatgtgcaattg
attatacagtgtgagcccccacgtgatgttgaagcttacattcatcggtctgggcgaact
ggaagggctggcaatactggtgttgcaattctgctttatgaaccgaaatataagtttagt
gtttccagaattgaaagagagtcaggtgtaaagtttgagcacatatctgcccctcagcct
gccgatattgctgaatcagttggatctgaagcagccaatgccatttcaagtgtctccgac
agtgttattccagtttttcgttcacaagcagaggaactcttgaactcttcaggattaccg
gctgtagatttgctagcaaaagcacttgctaaggctgctgggttcttggatataaaaaag
aggtcactgctttcatctttggagaactacgtgactttgcatcttcagacaggaaacact
atctattcaccatcatttgttttcagcgtcttaggaagatatttgccccaagagaaggtc
caaaatctcgaaagcgtctcgatcactgccgatagttacggcgtagtgtttgatgtgcct
gctgatgatgtcaatgaatttctcgaagttcaagacaaggctggcactttcactgtcgag
gtcctggaaacattgcctccactgcaagataggtatcacaaaggccccaactcagggcga
ggaaggtttggtcgtggaggtggtggttttcatggtggacaacgtggtggcggattctcc
agtggtagaggtggcagcaatcgtggcggaagaggtcgtggaggtggaggcaggaataac
ttcttccagaggaattga
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