Zingiber officinale (ginger): 122023473
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Entry
122023473 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP93A-like isoform X1
KO
K14309
nuclear pore complex protein Nup93
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122023473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122023473
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122023473
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nic96
TPR_12
TPR_1
TPR_14
TPR_2
PrmA
KwaB
TPR_16
Sel1
TPR_8
Motif
Other DBs
NCBI-GeneID:
122023473
NCBI-ProteinID:
XP_042437524
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Position
9B:complement(728782..739804)
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AA seq
862 aa
AA seq
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MANDQEMSGWTELLHSSTKLLEHAGPSSHFPPLQRNLDQLESLSKKLKSKTLRAEAPSQS
ISATRLLAREGIDAERLARDLKSFELKTSFEDVFPSEATNVEEYLQQVHEMAMVSSIQEA
QKDNLRSFNEHMMRVLEEDWQKEKREFLQSLSRLSTLPRGNSGALSGGLVRNVQMSSQIS
SPNVPKGPSVMEVVALANKPIIDKKATVYAEIVNSLNEARARGLPFKPATAFKTAYENLN
LDFSGSKSVTLQKIWHLTQALVGEYLNYQHKLSRKMILITGARHHLEWGHEKYILDTIKA
HPAQAALGGAVGNLEKIQAFLRVRLRDHGVLDFDAGDKSRQPPVDTTWQQIYYCLRTGYY
NEAKKVAELSRAAHHFAPQLAEWIASSGSISPDTASAASEECEKLLRMGDRAGRPGYDRK
KLLLYAMISGNRRQIDRLLRDMPNLFNTIEDFLWFKLSAVRDFSGGSSSIVLSEGLVPYS
LDDLQGYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVVYLSKEVGEEGYNVDSVHIS
IALADHGVLSDGIGAYSKRGIMDACAEVASIIKQYGSVYLRQGNLELALEYYAQAAAAMG
GGEVSWRAQGSNDQQRQQNKMLSQLLTEILLKDGGVSLLLGPRGTGEEGSLSKYMMDQNS
RKQFLLEAARQCQESGLHDKSIEIHKRVGAFAVALETVNKCLSDAICAISRGKLDGDSQA
ASLIHSGNDILESYRISSDASLQEREPVSEQQTVLRELEAILLVHKLARAGQHVDALQEI
VKIPFLPLNPLVPDVSYDIRSLSPYVQACVPDILKITLVCLENVRDSDGTLRALKSKIAN
LVANNMNSNWPRDLMERVARSI
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcaggagatgagcgggtggacggagctcctccactcttccaccaagttg
ttggagcatgccggcccttcgtcccatttcccccctctccagcggaacctcgatcaattg
gagtcgctttccaagaagctgaaatcaaagaccctccgcgcggaagccccctctcagtcc
atctcggccaccaggttacttgcccgggaagggatagatgcagaacggttggctagggat
ctgaagtctttcgagctgaagacatcatttgaggatgtctttccttctgaggcgacaaat
gtcgaggagtatttgcagcaggttcatgaaatggcaatggtttcatccatccaagaagct
caaaaggacaatttgagaagcttcaatgaacacatgatgcgagtcttagaggaggactgg
caaaaggaaaagagagaatttttgcaaagcttaagtcgactctctacattgccaagggga
aacagtggtgctttaagtggtgggcttgttcgtaatgttcagatgtcatctcaaatatcc
agtcctaatgttcccaagggcccatcagtcatggaagttgtggctctagctaataagcca
ataatcgataagaaagctacagtatatgctgagatagtgaatagtctaaatgaggccagg
gcacgtggattaccttttaaacctgctacagctttcaagacagcttatgagaatttgaac
ctcgatttttctggtagtaagtcagttaccttgcagaaaatatggcacctcacccaggca
ttagtgggtgaatatttaaattatcaacataaattgtcaaggaaaatgattctcataaca
ggtgcaaggcaccatcttgaatggggccatgagaaatatatccttgataccataaaagcc
catcctgcacaggctgctctaggtggagctgttggcaacctggaaaagatccaggcattt
ctccgggtgcgacttagagatcatggtgtgctagattttgatgcaggggataagtctagg
cagcccccagttgacacaacctggcaacagatttattattgtctaagaacaggctactac
aacgaagcaaagaaagttgctgaattgtcacgtgctgcccaccattttgctcctcagctt
gcagagtggattgcttctagtggttcaatttcaccagatactgcttctgctgcttccgaa
gagtgtgaaaaattgttaagaatgggtgatcgagcagggcgacctggttatgacaggaag
aaattgttactatatgcaatgatttctggcaatcgacgccagatagacaggttgcttaga
gatatgccaaatcttttcaatactatagaagatttcttgtggttcaaattatcagcagta
agggatttctctggtggatcctcttccatagttctaagtgaaggcttggtgccatatagc
ctagatgatcttcaaggttatttgaataaatttgagccatcatactatacaaaaaatggg
aaagaccctttggtttatccatatgttttacttttgagtattcagttgcttccagcagtt
gtatatttgtctaaagaagtaggagaggagggatacaatgtggattctgtgcatatatca
atagctttagcagatcatggagttctttcggatgggattggagcttacagcaagagagga
attatggatgcttgtgctgaagttgcaagcataattaaacaatatggttcagtgtatttg
cgtcaaggtaatcttgaattagctctagaatattatgctcaagcagctgctgctatgggt
ggtggagaagtgtcatggcgtgcacagggtagtaacgaccagcaacggcagcaaaataag
atgttgtcacagctacttacagagatattgctaaaagatggtggtgtttctcttttactt
ggtccaagaggcactggggaggaaggttcacttagtaaatatatgatggatcagaatagc
cgaaaacagtttttacttgaagctgctcgccaatgccaagaatctggactccatgataaa
tctatagaaatacacaagcgagttggagcatttgctgtagcattggaaacagttaacaag
tgtctctcagatgcaatctgtgccatttcacgaggaaaattagatggtgatagtcaagct
gccagtctgattcattcaggcaatgatatattagagagctacaggatttcttctgatgcc
agccttcaagaaagggaacctgtttctgaacagcaaactgtgttacgggagcttgaagct
attctactagtgcataagctagcgagagctggccagcatgtggatgctttgcaggaaatt
gtcaaaatcccattcctcccgttaaatcctctggtacctgatgtttcatatgatatccgt
agcttgtctccctacgtacaagcatgtgtgccagatatcctcaaaatcactcttgtttgt
ctggaaaatgttagagattctgatggaacattacgcgctttaaagtctaagattgccaac
ctggtagcgaacaatatgaatagcaattggccacgtgacttgatggagagggttgctcgg
agcatatga
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