Zingiber officinale (ginger): 122023488
Help
Entry
122023488 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122023488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122023488
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
122023488
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
HECT type E3
122023488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
ARM_ARMC5
HEAT_EZ
PDS5
HEWD
Motif
Other DBs
NCBI-GeneID:
122023488
NCBI-ProteinID:
XP_042437546
LinkDB
All DBs
Position
9B:complement(2259570..2276160)
Genome browser
AA seq
1908 aa
AA seq
DB search
METRSRKRAEASSSAPSSQTSPVTRRAKRSRTTVASSQAPPALSTRSRRSQNLPSSPPSL
SSSAAAAAAATATATAAAAALPMDTSAGDSVGRRRRSSGKSHQSGDRDRDAADRGKEAGA
SRSRERDRDAERMLGLNFDGGADDDIDGEGSLGIHHQNPSSTSSALQGLLRKLGAGLDDL
LPSSALSASSSQQSGRLKKILAGLRADGEEDKQFEALNQLCEMLSIGTEDSLGSLAMDSF
VPVLVGLLNHESNPDIMLLAARALTYLCDVLPSSCASVVRYGAIPCFCARLLTIEYMDLA
EQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADF
VMEAIPLLTNLLNYHDAKVVEHASACLTRIAEAFALCPDKLDELCNHGLLTQAAGLISPS
NSGGQASLSTSTYTGLIRLLSTCASGSPLAAKNLLLLGISGTLKDILLSSALVSGSSVTP
AITRPPEQVYVTVNLVDELLPSLPSGTVSLPMLANVLVKGTTMKHSASTSSKHDGSSETT
TEVSAHGKLLQEQPELLQQFGMDLLPVIIQVYSSSISGPVRHKCLSIIAKLMYFGSADMI
QTLLSVANISSFLAGILACKDPQLLIPAIQIAEILMDKLPGTFSKIFVREGVVHAVDVLI
SSESLSAVPSLPPISEKDCDPSLGISWRSRRNQRRNGASNIENISPNDPKGSIPEVSSAT
SGESLMENTNFCGTVSSLAKSFKDKYFPADPGATEAGLTEDLIHLKNLCSKLNSIIENAK
RKTKGKGKASGVSSFDLSASNEEQLNEVIMEILTELQKGDGVSTFEFIGSGVVLALLDYF
TCGTFGKERVSEANLPKFRQQALRRYKYFVATALPLELKDGSKVHMSILVQKLQNALSSL
EHFPVAISPLARSSYGSVRFSSGLGALCQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASL
AAVEDFLWPRVQRSDSAHKSSSSAGNSDPGAAATTGSAAPTPSTPGHRPSTRSRSSVMTG
VPATKDGSEVSASSSKGKGKAVVKCSADESRGPQTRNAARRRAASDKDTEMKTAHGESTS
EDEEFDMSPVEMDDTLMLVDDDISDEEDDHEEVLRDDSLPVCIPEKVHDVKLGDASDEGV
ADGSATHNQLKTISTLSDRSSTERATESSEFRRGSVFGSKGAMSFAAAAMAGLASIGGRG
IRVGRDYRGLASGTSSSDHQNKLIFTVGGKQLSKNLTIYQAFQRHLNLEEEDEKLNGSEF
HSDDNGFWSDIFTITYQKTVGQIDKTSQGCSNSSKSLKAASNSDFISNNNCQGMSLLNSI
LQGELPCDLEKSNPSYNVLALFRILNVLNHLSTCLRTQSTIDDFAEAKISNLDELNRIGP
KVSPEEFVNRKLTPKLARQMQDALALCSGSLPPWCCQLTKACPFLFPFDTRRQYFYSTAF
GLSRALHRLQQQQNSDNQNSTSEREVRVGRLQRQKVRVARNRILDSAVKVMTMYASQKAV
LEVEYFGEVGTGLGPTLEFYTLLSHDLQRVELSLWRSNTTSESSAMLVDGNGTDSRESDD
SLRAKKAVKDLPIGGRDIIQAPLGLFPRPWPPSVDASDGSQFSMVIEYFRLIGQTMAKAL
QDGRLLDLPLSMAFYKLVLGQELELHDILLFDAEFGKILQELQALVLRKQFLNSNPGNNQ
MAIADVCFQGASIEDLCLNFTLPGYPEYILKDGGENIMVDANNLEEYVTLVVDATIKAGI
IRQMEAFRAGFNQVFDISSLQIFSSHELDILTCGRTELWEPDTLADNIKFDHGYTAKSPS
IIHLLDIMGEFTAEQQHAFCQFVTGAPRLPPGGLAALNPKLTIVRKLSSAVANSTANENG
VSESVDDDLPSVMTCANYLKLPPYSTKEIMHKRILYAISEGQGSFDLS
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcgcagccggaagcgggcggaggcctcctcgtcggcgccttcttctcagacc
tcccctgttacccgccgcgccaaacgctcccgcaccactgtcgcttcctctcaggctccc
cctgccctgtctacgcgatcccgccgttcacagaacctgccatcgtctcccccctcgttg
tcgtcctctgctgctgctgctgccgccgccactgccactgccactgccgctgccgctgcc
ctacccatggacacctcggctggagactccgtcggtcgtcgccgccgcagctctggcaag
agccatcagtctggtgaccgcgatcgggatgctgccgacaggggaaaggaggcgggagcg
tcaaggtcgagagagagggatagggacgccgagaggatgttagggttgaattttgatggc
ggagccgatgatgatattgatggtgagggtagtctaggtatccaccatcagaacccgtca
tcaactagcagcgcccttcaggggcttctcaggaaattgggtgctggccttgatgatcta
ttgccgtcgtctgctctgtcagcctcttcttcgcagcagagcgggcgtctgaaaaagatt
ttggcgggtcttcgtgctgatggcgaagaggataagcaatttgaggcactgaaccagctc
tgcgagatgctgtccattggaactgaggattctcttgggtcgctagcgatggactcattt
gtgccagtgcttgtgggacttctcaaccatgaaagcaatcccgacataatgttacttgct
gccagggccctcacctacttatgtgatgtcctgccttcatcatgtgcgtctgttgttcga
tatggtgctattccttgtttctgtgctcgccttctcactatagagtacatggacttagca
gaacagtcacttcaagctctcaagaagatatcacaagaacacccaacagcttgcttacgt
gctggtgcacttatggcagttctatcttacctagactttttctccacaggagttcagaga
gtggctctctcgactgcagcaaatatgtgcaagaaactcccatctgatgcagctgatttt
gtcatggaagcaatcccattgttgaccaacctcctcaactatcatgatgcaaaggttgta
gaacatgcttctgcgtgcctgacaagaattgcagaagcatttgcattatgtcctgataaa
ttagatgagttgtgtaatcatggattgcttacacaagcagcaggactgatctctcccagt
aattcaggaggacaagcatctcttagtacttctacatatacgggtttaattcgtctactt
tcaacttgtgctagtggatctcctctagcagctaaaaatcttcttcttttaggaattagt
ggcacacttaaagatattcttctcagttctgcacttgtttctggttcttctgttacacct
gccattactaggccacctgaacaggtttatgtgacagtgaaccttgtggatgaacttctg
ccatccttgccaagtggaacagtttctttgccaatgctcgctaatgtacttgtgaaagga
acaactatgaaacattctgctagcacttctagcaagcatgatggttctagtgaaactact
accgaagtatcagctcatgggaaattattgcaagagcaacctgaacttttgcagcagttt
ggaatggacctacttcctgttataatacaagtgtattcttccagtataagtggtcctgtt
cgtcataaatgtttgtctattattgcaaagttgatgtattttggctcagcagatatgatc
cagaccttgctcagtgttgcaaacatatctagtttcttagctggcattttagcatgtaaa
gacccacaactcttgattcctgctattcagattgcagagattcttatggataagcttcct
ggaacattttccaagatttttgtgagggagggggttgttcatgctgttgatgtactaata
tcatcagaatctttaagtgcggttccttctcttccgcctatctctgaaaaggactgtgat
ccttcacttggaatatcttggcgttctcgtcgtaatcaacgacgtaatggtgcttcaaac
attgaaaacatctcacccaatgatccaaaaggatctataccagaagtttctagtgcaact
tcaggcgaatcactaatggaaaatacgaatttttgtggtacagttagttctctagccaag
tctttcaaagataaatattttccagcagacccaggtgcaactgaagctggactcacagag
gatctcattcatttgaaaaatctttgctctaagttaaactccatcattgaaaatgcaaag
agaaagactaaaggtaaaggtaaagcctctggggtgtcctcctttgacttatctgctagt
aatgaggaacaactaaatgaagtgataatggagatactgaccgaacttcaaaaaggtgat
ggtgtatctacttttgagtttattggcagcggtgttgttttggcattgttagactatttt
acttgtggcacatttggaaaagagagagtttctgaagctaatttgccaaagtttcggcag
caagctcttcgaaggtacaagtattttgttgcgactgcacttcctttggaacttaaggat
ggtagcaaagttcatatgagtattttggtccaaaagcttcaaaatgctttatcttcttta
gaacattttcccgttgcaataagtccattggctaggtctagctatggaagtgtacgcttc
tcctctggtctaggggccttatgtcaaccttttaagctgcgtttatgccgcgcacaaggt
gaaaaatctcttcgtgattattcatcaaatgttgtgcttattgatccattagccagtcta
gctgctgttgaagatttcctctggccaagagttcagcgaagtgactcagcacataagtca
tcatcatcagctggcaattctgatcctggagctgctgctactactggatctgctgctcct
acaccatcaactcctggacaccgtccttcaaccaggtctagatcatcagttatgactgga
gttccagctacaaaagatggttcagaagtaagtgcaagttcttccaaagggaagggtaag
gctgtcgtgaaatgtagtgcagatgaatcaagaggaccacaaacaagaaacgctgcccgc
agaagagctgcctcagacaaagacacagaaatgaaaactgcacatggcgaatctacctct
gaggatgaggagtttgatatgtctcctgttgagatggacgacacacttatgcttgttgat
gatgacatctctgatgaggaagatgatcatgaagaggtattgagagatgactctcttcct
gtctgcatacctgagaaggtacatgatgtcaagcttggagatgcctccgatgaaggtgtg
gcagatggttcagcaacacataatcagctaaaaacaatatccactttgagtgacaggtct
tccacagaaagagccactgaatcttctgagttccgaaggggaagtgtgtttggttcaaag
ggggcaatgtcatttgctgctgctgcaatggcagggcttgcttcaataggtggaagaggt
atcagagttggccgagattatcgtggacttgcatctggtaccagttcaagtgaccatcag
aataaactgatcttcacagtcgggggaaaacagcttagcaagaacctgaccatttatcaa
gctttccagcgccatcttaatcttgaagaggaagatgagaaactcaatggatctgaattt
cacagtgatgacaatggcttctggagtgatatatttacaataacataccagaaaactgtt
gggcagattgacaagacttcccaaggatgttcaaattcttcaaaatctttaaaagctgca
tctaattcggatttcattagtaataataattgtcaaggaatgtccctgctcaatagcatc
ttgcaaggggagcttccttgtgatcttgaaaaatccaatccttcatataatgtattagca
ttattccgtatcctgaatgttttaaatcacttgtcaacctgtctgagaactcagtccact
attgatgattttgcagaagcaaaaatctctaatttagatgaacttaatagaattggtcca
aaggtgtcacctgaggaatttgtgaatagaaagctaactccaaagcttgctcggcaaatg
caggacgcgctagccctttgtagtggtagccttcctccatggtgttgtcagttaacaaaa
gcgtgcccttttctttttccatttgacaccaggaggcaatatttctattcaacagctttt
ggtctatctcgagcattgcatcgacttcagcaacaacagaattctgataatcagaattca
acaagtgaaagagaggttcgagttggtaggctgcaaaggcaaaaggttcgtgtagcccgg
aatcgtatcttggactctgccgtaaaggttatgacaatgtatgctagtcagaaagctgtc
cttgaagtagaatattttggtgaggtaggcactggattgggcccaacattggagttctat
acccttttaagtcatgacttgcaaagggttgaattgagtttatggaggtctaacactaca
tcggagagttctgcaatgctagttgatggaaatggaacagatagtagagagagtgatgat
agtttacgagcaaagaaagcagtcaaggatttgcctattggaggacgcgatattatacaa
gctcctcttggtttattccctcgtccttggccgcctagtgtggatgcttctgatggtagt
cagttttcaatggttattgagtattttcgtctgattggtcagactatggcaaaagctcta
caagatggtcggctgctggacttgccgctttcaatggcattctacaaacttgtattgggc
caagagcttgaattgcatgacatcctcttatttgatgctgagtttggaaagatattacaa
gaattgcaagcccttgtactccgcaaacaatttctgaattcaaatcctggtaataaccaa
atggcaattgctgatgtctgtttccaaggtgcctcaattgaagatctgtgcttaaatttc
acccttcctggttatcctgaatacattcttaaagatggaggggaaaatataatggttgat
gctaacaacttggaagagtatgttactctagtagttgatgcaactattaaggcaggcatt
ataagacagatggaggcatttagagcgggtttcaaccaggtctttgacatctcctcttta
caaatattttcgtcacatgagctcgacattctaacctgtggtcgtacagaattgtgggag
cctgacactctagctgacaatataaagttcgaccatggttacactgccaaaagcccttca
attattcatctgcttgatataatgggagaattcacagcagagcagcaacatgctttttgc
caatttgtaaccggtgctccaaggcttccacctggtggtttagctgcattaaatccaaag
ctgaccatagttaggaagctttcttcggcggtagcaaactctacagcaaatgagaatggg
gtctctgaatcagtggatgacgacttgcctagcgttatgacatgcgcaaactaccttaaa
ctcccaccctactcaactaaggaaatcatgcacaaaagaatcctttatgccatcagcgaa
ggccagggttcctttgatctctcgtga
DBGET
integrated database retrieval system
