Zingiber officinale (ginger): 122023491
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Entry
122023491 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122023491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122023491
03036 Chromosome and associated proteins [BR:
zof03036
]
122023491
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122023491
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122023491
mRNA degradation factors
5'-3' decay
Decapping complex
122023491
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122023491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122023491
NCBI-ProteinID:
XP_042437548
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All DBs
Position
9B:complement(860570..868652)
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AA seq
490 aa
AA seq
DB search
MNPRGRFPPPGMGNVRGSSGGANPGSYPRNPQQQQQYVQRSQVNSQPNPQFQHQHQQNQQ
WSMRNHMEVDSSAGELAKRVQSEVIGSSSQDWKAQLKIPPPDTRYQTEDVTATKGNEFED
YFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ
EHNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVG
TPGRILDLAKKGICVLKDCSMLIMDEADKLLSPEFQPSIQQLIQFLPANRQILMFSATFP
VSVKDFKDRYLPKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFC
NSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ
AVNVVINFDFPKNSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLHRIEQELGTEIKQIP
SQIDQAIYCR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctcgaggcaggtttcctccccccggcatgggtaacgtccgagggagtagcggg
ggcgcaaaccctggttcctatccgaggaatcctcagcagcaacagcagtatgtgcagcgg
agccaagttaatagtcaaccaaacccgcagttccagcatcaacatcagcagaatcagcaa
tggtcgatgaggaaccatatggaggttgattctagcgcaggggaattagcgaaacgcgtt
cagtctgaggtcattggttccagttcccaagattggaaggcacaattaaagattccacct
cctgacacacgctaccagactgaggatgtaactgcgacgaaaggaaatgagtttgaagac
tattttctgaaacgagaacttcttatgggcatatatgagaagggttttgaaaggccttca
cctattcaggaagaaagcatccctattgcacttactggcagtgacattcttgccagagct
aaaaatggaactggaaagacagctgcattttgtattccagcacttgaaaaaattgaccaa
gagcacaatgccattcaagttgtgatattggttccaacaagagaattagctcttcaaaca
tctcaagtttgtaaagaacttggaaaacatctgaagattcaggttatggtaactactgga
ggaactagcttgaaggatgacattatgcgtttatatcaacctgtccacttgcttgttgga
actcctggtcgaatacttgatcttgcaaaaaagggaatctgtgttttgaaggactgttca
atgctcatcatggatgaggctgataaacttctctctccagagtttcaaccatcaatacag
caacttattcagtttcttcctgctaatagacaaattttaatgttttcggcaacgtttcct
gtttctgttaaggattttaaagacagatacctaccaaaaccatatataatcaatctaatg
gatgagctcacactgaagggaataacacaatactatgcttttgtagaagaaaggcagaag
gtccactgcctgaatactcttttttcaaagcttcaaatcaatcaatctattatattctgc
aattctgttaatcgggtggaactcttagcaaagaaaatcactgagttgggttattcttgc
ttctacattcatgctaaaatgttgcaagatcataggaaccgtgtcttccatgactttcgc
aatggtgcctgcaggaaccttgtttgcacagatctctttaccagaggaattgacattcaa
gctgttaatgttgtcatcaattttgattttcctaagaactctgaaacatatcttcacagg
gttggtcgttcaggaagatacggtcaccttggtttggctgtcaatcttattacctatgaa
gatcgttttaacttgcatcggattgaacaagaacttggaactgagataaagcagattcct
tctcagattgatcaggctatatactgtcggtga
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