Zingiber officinale (ginger): 122023532
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Entry
122023532 CDS
T08725
Name
(RefSeq) WD repeat-containing protein 44-like
KO
K20241
WD repeat-containing protein 44
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122023532
Membrane trafficking [BR:
zof04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
122023532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WDR55
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR35_TULP_N
Beta-prop_TEP1_C
Beta-prop_DCAF12
WD40_like
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_EIPR1
RMC1_N
Beta-prop_DCAF4
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
122023532
NCBI-ProteinID:
XP_042437606
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Position
9B:complement(27277707..27282383)
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AA seq
798 aa
AA seq
DB search
MMRYSAAVEGEIEEEEEEEEDEEEFHESLDRILSSCSSASASDDDLDRRRRHSSSSLPSL
SSLDIWTSVPAPVAERRVLLLQRLGLAGDPSLDRFDGSPLESAAFGMIRSASDGSAESSS
VSKPDSDPIRRPCRHNNQRSINLPVSHMPTGHHEVSEGDGSSCGGDGEELGCSIKNLDNG
RELVVKGFGKDGMGNKLKEVGTGRQLTMDEFENWAGRSPIVQELMRRQNVEEAASGRAPS
GDVVPKEVNRPKKKGGWLTSIRNVAGAALGGGDLKDRRSRSTDVWQSSDTGARRLSSSTD
DNQARTRGLDPRVKVRQHGKSHKELTGLYLSQATQAHNGSIWSIKFSLDGRYLASAGEDR
VIHVWEVFEISAKDGFLLKASEKNETLNPFALAISSYPTDPGLGLVSGEANHREKKRRAK
MPGNQRSVSSDPLIMPEQVFSLSEKPVCSFRGHLDDILDLSWSRSQYLLSSSMDKTVRLW
HLSSVSCLKTFTHSDYVTCIQFNPIDDRYFISGSLDEKFRIWSIPDRQIVDWNDLHEMVT
AACYTPDGQGALVGSHNGSCHLYDTSGNKLLQKCRIDLQNNKKKSRHKKITGFQFAPGSS
SKVLVTSADSRVRVIDNNELVHKFKGFRNTSSQISAHWAANGKYVICASEDSHVYLWGCD
EDSRSRKCKTVESVTETYEYFRCQGVTVAVPWPGSRTGELVRNLSNKQNELIGDSYILPP
VYPRNARLITNQTPFNDKVSATWPEELMVDKQTPQSNGLLFGRQSPTQSRSAWGLVTVAA
SRSGEIRIFQNFGTPFQM
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgctacagcgcggcggtagagggggaaatcgaagaggaggaggaggaggaggaa
gatgaagaagagttccacgagtccttggaccgcatcctttcctcctgttcctccgcctcc
gcctctgacgacgacttggatcgtcgtcgccgccacagctctagctccctcccgtcgctc
tcctcgctcgacatatggacctccgtgcccgcccctgtcgccgagcgtcgcgtgcttcta
ctccagcgcctcggcctcgctggcgatccctccctcgatcgtttcgatggctcccccctt
gagtccgccgcctttgggatgatccgatccgcatcagatggctccgccgaatcctcctct
gtgagcaaacccgattccgatcccattcgccggccgtgccggcacaataatcagaggtcg
atcaatttgcctgtttcccacatgcctacgggccaccacgaggtctccgagggcgacgga
agtagctgtggcggagacggcgaggagctcggatgctcgatcaagaacctcgacaacggg
agggagttggtggtgaaaggatttgggaaggatgggatggggaacaagttaaaggaagta
gggacggggcggcagctgactatggatgagttcgagaactgggccggtcggtcgcccatc
gttcaagagctgatgagacggcagaacgtggaggaggctgcctccggccgtgcgccgagc
ggtgatgtggtgcccaaggaagtgaataggccaaagaagaaagggggttggttgacaagc
atcaggaatgtggcaggggctgcgctaggtggaggggaccttaaggatcgccgaagtagg
agtactgatgtatggcaatcatcggatacgggagccaggaggctgagctcttccacggat
gataaccaggcgaggacgcgtggtctcgaccctcgagtcaaggtccggcagcatgggaag
tcccacaaggagctcacgggactgtacttgagccaagcgactcaggcgcataatggttcc
atctggagcatcaagttcagcttggatggccggtacttggccagtgcaggagaggaccgt
gtcattcacgtatgggaagtctttgaaatttctgcaaaggatggttttttgctgaaagca
tcagagaagaatgagacactgaatccatttgctttggcaatcagtagttacccaacagat
ccaggactagggttggttagtggagaagcaaatcaccgggaaaagaagagaagggcaaag
atgcctggtaaccagagatccgttagctccgaccctcttataatgccagagcaggtgttt
tctttgtcagagaagcctgtgtgctccttcagaggccatttggatgatatccttgatctc
tcttggtcaagatcacagtatctcctttcatcttcaatggacaaaacagttcgactgtgg
cacctgtctagtgtttcctgcttaaaaacatttacacacagtgactatgtgacttgcatc
cagttcaatcctatcgatgacagatacttcatcagtgggtcgctggatgagaaatttcga
atatggagtattcctgaccggcaaatagtggactggaatgatttgcatgagatggtcact
gccgcttgctatacccctgatggacagggtgctctagttggttcgcacaatgggagctgc
cacttgtatgatacatctggtaacaagcttctccaaaaatgtcgtattgatttgcaaaac
aacaaaaagaagtccagacacaaaaaaattactggattccagtttgctcccgggagttct
tcgaaggtacttgttacatccgcagattcacgtgtgcgggtcattgataacaatgaacta
gtacacaaattcaaagggtttcgcaatacaagcagccaaatctcagcgcactgggctgct
aatggaaaatatgttatctgtgctagtgaggactctcatgtatacctatggggatgtgat
gaagattcaaggtctaggaaatgtaaaactgtcgaatctgtcacagaaacttacgagtac
ttccgttgccagggcgtcacagtggctgtgccttggccaggctcaagaactggagagctg
gtcagaaatctctcgaataagcagaatgaactaattggagattcttatattctacctcct
gtttacccaagaaatgccaggctcattacaaaccaaactcccttcaatgacaaggtttct
gcaacttggcccgaggagctcatggtcgataaacagacaccccaaagtaatggacttctt
ttcggccggcaatcgccaactcaaagcagatcggcctggggcctggtgacggtcgcagca
agtcgaagtggtgaaattagaatttttcaaaattttggaactccatttcaaatgtaa
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