Zingiber officinale (ginger): 122023605
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Entry
122023605 CDS
T08725
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122023605
03410 Base excision repair
122023605
03420 Nucleotide excision repair
122023605
03430 Mismatch repair
122023605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122023605
03036 Chromosome and associated proteins [BR:
zof03036
]
122023605
03400 DNA repair and recombination proteins [BR:
zof03400
]
122023605
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122023605
DNA Replication Termination Factors
ELG1-RFC complex
122023605
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122023605
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122023605
Check point factors
HRAD17(Rad24)-RFC complex
122023605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA
Sigma54_activ_2
DUF815
Rad17
RuvB_N
AAA_22
AAA_29
T2SSE
Mg_chelatase
RsgA_GTPase
TsaE
nSTAND3
ABC_tran
Adeno_IVa2
AAA_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
122023605
NCBI-ProteinID:
XP_042437740
LinkDB
All DBs
Position
9B:38683507..38696588
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKHRPRSLDKIIAHEDIAQNLKKLVTEQDCPHLLFYGPTGSGKKTLIVALLKEMFG
PGVEKVKLENKTWKIDAGTRTIELELAMLSSTYHVEMNPSDAGFQDRYIVQEIIKEMARN
RPVDTKGKRGFKVLVLNQVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNIRVNAPSEEQIIRTLEFIGKKENLQLPPGFAVRIAAQSNRNLRRAILTFEACRVQQY
PFTANQALPPLDWEQYVSEIASDIMKEQSPKRLFSVRGKIYELLVNCIPPEIILKKLLSE
LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgggtcgacaagcaccgcccgaggagcctagataagatcattgcccacgaagac
atcgcccaaaacctgaagaaactggttacggagcaggactgccctcatctcctattctat
ggcccgactggttctggcaaaaaaaccctaatcgtggcccttctcaaggaaatgtttggc
cccggggttgaaaaggtgaagttggagaacaagacctggaaaattgatgctggtacccga
acaattgagttggaactggcgatgctatccagcacatatcacgttgagatgaatcctagt
gatgcaggatttcaggacagatatatagttcaggagattattaaggaaatggcaagaaac
aggcctgtagatacgaaaggcaaaagagggttcaaagtgttagtgctgaatcaagttgac
aaactatcaagagaagctcaacattctctccggagaacaatggaaaagtatagtgcttca
tgcagactaattttgtgctgcaacagctcatcaaaagtaactgaggctgttcgatcccgc
tgtctaaacattagagtcaacgcacctagtgaagaacagattatcagaactttggagttc
attggcaagaaggaaaatctacaacttccacctggatttgcagttcgtatagcagctcaa
tcaaaccgtaatttaagaagagcaatattgacttttgaagcctgtcgagttcagcagtat
ccattcactgcaaaccaggcgttgccacccttggactgggaacaatatgtttctgaaatt
gcatctgatataatgaaggagcagagtcctaaaaggttattttctgtgcgtggaaaaata
tatgaacttcttgtgaactgcattcccccggaaattattttaaagaaactattgtcagag
ttattgaagaaattggactctgaattaaagcttgaagtatgtcattgggctgcatattat
gaacacaggatgcgacttggacaaaaggccatattccacatagaagcctttgtcgcgaaa
ttcatgagcatatacaagtcattcctgattgcaacattcgggtga
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