Zingiber officinale (ginger): 122023613
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Entry
122023613 CDS
T08725
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial-like
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122023613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122023613
03016 Transfer RNA biogenesis [BR:
zof03016
]
122023613
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
122023613
Messenger RNA biogenesis [BR:
zof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
122023613
Transfer RNA biogenesis [BR:
zof03016
]
Prokaryotic type
tRNA degradation factors
122023613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
Urease_gamma
KH_1
Ribul_P_3_epim
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
122023613
NCBI-ProteinID:
XP_042437756
LinkDB
All DBs
Position
9B:85544297..85564096
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AA seq
974 aa
AA seq
DB search
MAAMAAFLRRPKSIPLLAATLSAGVRPRRRSRTEFRSLCNAVTLDCASPASEPAAGPSPG
RKVLEIFREEFEVGSRTVSIETGKIARFANGAVVIAMDDTNVLSTVASARGDGARDFLPL
TVDYQEKQYAQGVIPTTFMRREGAPKERELLCGRLIDRPIRPLFPHGFYHEVQVMANVLS
SDGKQDPDVMAANATSAAIMLSDIPWNGPIGVIRVGRIDGKFIFNPTMDELSLSDLNLVY
ACTKDRTLMIDVQAREITENDLQAGLKLAHPEAIKYIDPQIRLAEKAGKKKREYKLSMIS
DSALEKIRSIAEAPIEAVFTDSSYGKFERGEALDLITQTVKAKLEEDCDEDSLKVLPKAV
DMVRKQIIRRRIIDKGLRVDGRKLDEVRPLYCESGIYHMLHGSSLFSRGDTQVLCTVTLG
APGDAQRLDSIVGPPTKRFMLHYTFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPP
EGDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPVREHVAGVSVGLISDVDPSTG
NITDYRILTDILGLEDHLGDMDFKISGTRKGITAIQLDIKPAGIPLDIICESLEPARKGR
IQILNRMEEKISAPRTMGDGSTPRLATFKLNPESLRRSIGFLNFQRKRIEQETGARVSVS
DGTVTIVAKTGSIMEKAQEKITFLIGREIEVGGTYKGVVSSIKEYGAFIEFNGGQQGLLH
ISELTHEPVSKVSDVLSVGQELSVMCIGQDLRGNMRLSLKATSPKKGSVDNHDPISAKQS
VNVWASPSENVATCTENLESTDVVQGESNEIQSITDSSPAVVIRSVAECEAQEFAAGRVT
QTTLRRLSRSPRPYDSSQDAGKSNLQNRQSKKEKNVSNGTKGKAGTIQGSVSHTGGEKPK
PSVQAGSLKIGEKLIAKICQIRAHGLVLELSSGIRGMYKFEVNGKRDFELGKELQVRCSS
FSIKGIPVFALLEN
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgatggcagcatttctccggaggccgaagtctattcctctcttggcagccacg
ttgtctgctggcgtccgtcctcggcgccgctctcgcactgaattccgctccctctgcaac
gccgtgactttggattgcgcttcccctgcttcggagccggcggcgggaccttcgcctggc
cggaaggttctcgagattttcagggaggagttcgaggttggatcccgcaccgtctccatc
gagaccggcaagatcgcgaggtttgcgaacggagctgtggtcatcgctatggacgatact
aatgttctctccacggtcgcgtcagccagaggtgatggagctcgtgactttttgcccctc
acggttgactatcaagaaaaacaatatgctcaaggtgtcatccctacaacatttatgcgg
agagagggagcccccaaggagcgggaacttttatgcgggcgtcttatagatcgtcctatt
cgtccactatttcctcacggcttttaccatgaagttcaggtcatggcgaatgtcctttct
tcggatgggaagcaagatccggatgtcatggcagctaatgccacatctgctgctattatg
ttatctgatatcccttggaatggcccaattggggttattcgtgtggggaggattgatggg
aaatttatttttaatccaactatggatgagctaagcctcagcgatctcaatttggtgtat
gcatgtaccaaggatcgtactctaatgattgatgttcaagcacgagagatcacagaaaac
gaccttcaagctggattaaaacttgcacatccagaggctatcaaatacatagatcctcaa
attagattggctgaaaaagcaggaaagaaaaagagagaatataagctctcaatgatttct
gatagtgcattggagaaaataaggagtatagcagaagcacctattgaagctgtatttaca
gactcatcatatggaaagtttgaacgtggggaagcattagacctgatcactcaaactgtt
aaagcaaaactcgaagaagattgtgatgaggatagcttaaaagttcttccaaaagccgtt
gacatggttaggaaacagatcattcgtcgaaggattatcgataaaggacttcgagtagat
ggcagaaaacttgatgaagttagacccttgtattgtgaatctggaatataccatatgcta
catggatcttcactcttctctcgtggagatactcaagtcttgtgcactgttacacttggg
gctcctggagacgcacagcgattagactcaatagttgggccaccaacaaagcgcttcatg
cttcattacacctttcccccattctctatcaatgaagttgctaaacgaggtggactgaat
aggcgggaagttggacatggaactcttgctgagaaagctttgcttgctgtgctacctcca
gagggtgattttccatatactgttcgtgtgaattcagaagttatggcttctgacggttca
acatcaatggccacagtatgtggagggagtatggctttgatggatgctggtattccagta
agggaacatgtcgctggagtttcagtgggtcttattagtgatgtggatccatccactgga
aacattactgattatcgtatactgacagacatattgggtcttgaagatcaccttggggac
atggacttcaaaatttcaggaactaggaaagggattactgcaatccaactagatataaaa
cctgctggaatacctctagacattatttgtgagagtttagaacctgcaagaaagggccgg
attcaaattcttaatcgcatggaagagaaaataagtgcacctcgtacaatgggcgatgga
agcacacctagattagccaccttcaaacttaatcctgaatctcttcggcgatctattggt
tttttgaattttcaaagaaagcggattgaacaagaaacaggtgcacgtgtttctgtgagt
gatgggactgtcactattgtagcaaaaactggatctattatggaaaaagctcaagaaaag
atcacttttcttataggacgtgaaattgaagttggtggcacgtacaaaggtgttgtttct
tcaattaaagaatatggtgcttttattgagttcaatggaggtcaacagggtcttcttcac
atttctgagttgacacatgaaccagtatcaaaagtttctgatgttttatctgttggacaa
gagttgtcagtaatgtgcatcggacaggatttaaggggaaacatgagactatctttgaag
gctacgagcccaaagaaaggctctgtggataaccatgatcctatatcagcaaaacaatca
gtgaatgtttgggcctcaccatcagagaatgtagccacctgcacagaaaatctcgagtca
acagacgttgtacaaggtgaaagtaatgagattcaatccatcacagattcatctccagca
gtagtaatacggagtgttgcagaatgtgaagctcaggaatttgctgcgggtcgagttacc
caaaccactcttcgaaggcttagcagatctcctaggccttatgattcatctcaagatgct
gggaagtcaaatttgcagaacagacaaagcaagaaagagaaaaatgtttccaatggaacc
aaaggtaaggctggtaccatacaaggaagtgtttcccacacaggaggtgagaaacctaaa
cccagcgtacaagcaggttcactgaagattggtgaaaaactgatagcaaagatttgtcag
atccgtgcacatggtttagtactcgaactaagtagtggaattcggggaatgtacaaattt
gaggtgaatggtaaaagggatttcgagttaggcaaagagcttcaggtgagatgttcaagc
ttttctatcaagggaattccagtctttgcacttttggagaattga
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