Zingiber officinale (ginger): 122023652
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Entry
122023652 CDS
T08725
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122023652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122023652
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122023652
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
ExsD_M
Motif
Other DBs
NCBI-GeneID:
122023652
NCBI-ProteinID:
XP_042437821
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Position
9B:complement(106750692..106755198)
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AA seq
897 aa
AA seq
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MEKISERDRSSRKSSHDHDSNRDRDSGISHRNRDRDRDRDHKQRHREHHHRSSKNSDEKR
HSDDDRRHGSREITPSDADEERDRRRERSSSRARNSVDCELTEEPRHHYSNKRKEHRDEE
AVEKNGKRTKVSEGERDGRKERRCFEDRAADGLNGDHKEEKRDDKSSRSRKREQKYKIRD
DERDNERVKDDILSDGDDKKKPRKEGRKFTDTMKVEKMEVDHGDGLGHHKEVKDEHKSKD
RLKEGNLESALEAAVHGSPSLASTMVSTNFGVPHHSVPTKVSSFNTSNENEGVSIRSDEV
PGKSSTDGTATSVTVKRGSLSLDALAKAKRALQMQKELSEKLKKIPVLNKSVSSSTDNKQ
VSSVSSASQPDHFGSLASASANHIQATSSAPTVAVSGNLSAVGSAGVLPGLSNMRNIEAV
KRAQELAAKMGFHQDPEFAPLINMFPGQLSVDLAVSQKPSKAPVLRLDAQGREIDEHGNV
VNIPKLTNLSTLKVNINKQKKEAFQIIKPDLDAIAATNAHFDDQMGINKTKLLRPKRMTF
QFVEEGKWSKQAEIVKFKSQFGEAQAKELRMKQTQLEKAKAEPEINPNLIAVGVRIKKEK
LKDAIPEFEWWDKPLLPGGTYDDDVGQKLNMDKITIYVEHPRPIEPPAESAPPPPQPLKL
TKKEQKKLRTQRRLAKERDRQEMVRQGLLEPPKPKVKMSNLMKVLGSEATQDPTKLEMEI
RSAAAEREQAHVDRNIARKLTPAERREKKEKKLFEDPSSLETFVSVYKMKDLSHPQTRFK
VDVNAQENRLTGCAVISDGISVVVVEGGKKPIKRYGKLMLRRINWAAAVGNGEEGSEDAG
APSNSCALVWQGTAAKPSFNRFLVHQCRSEAAARKIFLDAGVPHYWDLAFNFSEELL
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatctccgagcgagatcgatcaagtcgcaaatcctcgcacgatcacgatagc
aaccgcgatcgagactccgggatctcccaccgcaatcgcgacagggatcgggaccgcgac
cacaagcaacgccatcgcgaacaccaccatcgaagcagcaaaaactcagacgagaagcgc
cacagcgacgatgaccgtcgtcatggctctagggagattacaccttccgatgctgatgaa
gaacgcgatcgacgccgcgagcgctcgtcgagtcgggcgcgcaactcggtggactgcgaa
ttaactgaagagccgcgtcaccattactcgaacaaaaggaaggagcaccgggacgaagag
gctgttgagaagaatggaaagagaactaaggtttcggagggtgagagggacggcagaaag
gaaaggcgttgttttgaagaccgagctgctgatggtctgaacggggatcacaaggaggag
aagcgcgacgataaatcctcaaggagtaggaagagggaacagaagtacaagatcagggac
gacgaaagagacaatgagagagtgaaagatgatattttgagtgatggggatgataaaaag
aaaccacgaaaggaggggagaaaatttaccgatactatgaaggttgagaagatggaagtg
gatcatggcgatggattaggtcaccataaagaggtcaaggatgagcacaagtctaaagat
agattgaaggaaggaaatctggagagtgccttggaggctgctgttcacggatcaccctct
ttggcttcaacaatggtttctacaaattttggtgtacctcatcattctgtgcccaccaag
gtatcttcatttaatacctccaatgaaaatgagggagttagtattagatctgatgaggtt
cctggaaaatccagtacagatggcacagcaacttcagttactgtcaaaaggggcagcttg
tctcttgatgctttagcaaaagctaaaagagctctacagatgcagaaggagttgtcagag
aagctcaagaagattcctgtgttaaacaagtctgttagctcaagcactgataataaacaa
gtatcatctgtatcaagtgcatcccaacctgatcactttggttctttggcttctgcctca
gcaaaccacattcaggcaacatcaagtgcccctacggttgcagtatcaggaaatttatca
gctgttggaagtgctggtgtccttccggggttgtcaaacatgcgcaacatcgaagcagta
aagcgtgcacaggaacttgctgcaaaaatgggtttccatcaggatcccgaatttgcccca
cttattaatatgttccctggacagttatcagttgacttggcggtatctcagaaaccttcc
aaggctcctgtattgcgcttagatgcacagggtagagaaattgatgaacatggaaatgtt
gtaaacatacctaagctcacaaatcttagcacccttaaggttaatattaacaagcagaaa
aaagaggcattccaaataataaagccggacttagatgccattgcagcaacaaatgctcat
tttgatgaccaaatgggaataaataaaactaagttattaaggcctaaaagaatgacattt
cagtttgttgaggagggcaaatggtcaaagcaggcagagatcgtgaaatttaagagtcaa
tttggagaagcacaagctaaagagttaaggatgaagcagactcaactggagaaagcaaag
gcggagccagagattaatccaaacttaatagcagtaggagtgaggatcaagaaggaaaag
ttgaaggatgcaatacctgagttcgagtggtgggacaaaccgctactacctggaggaacc
tatgatgatgatgtgggacagaagcttaatatggataaaattacgatttatgtggagcac
ccacgaccaattgaacctcctgcagagtcagctcctcctccaccacagcctctcaagcta
acaaagaaagagcaaaagaaacttaggacccagaggcgtctagcaaaggagagagatagg
caagagatggttagacaaggcctcttagagccccctaagccaaaggttaagatgagtaac
ctgatgaaagttcttggttctgaagcaactcaagacccaacaaaacttgaaatggaaatt
cgtagtgctgctgctgagcgtgaacaagctcatgttgatagaaacattgctcgcaaactc
acccctgctgaacggcgtgaaaagaaagagaagaagctttttgaggatccaagttcactt
gagacttttgtttctgtttacaagatgaaagacctctcgcatccacaaacacgtttcaaa
gtcgatgtgaatgcgcaggagaataggttgacaggttgtgctgtgatatcagatggaatt
agtgttgtggttgtggaaggaggcaaaaaaccaataaaaaggtacgggaagctgatgctg
agacgcatcaactgggctgctgcagtgggcaacggggaagagggttctgaagatgcaggt
gctccttccaacagttgtgctttggtttggcagggtactgctgctaaacccagcttcaac
aggtttcttgtccatcaatgcagaagtgaagctgctgctaggaagatatttctcgatgct
ggagttccacattactgggatctggccttcaatttttctgaggaactactgtaa
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