Zingiber officinale (ginger): 122023775
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Entry
122023775 CDS
T08725
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122023775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122023775
03036 Chromosome and associated proteins [BR:
zof03036
]
122023775
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122023775
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122023775
PBAF complex
122023775
GBAF(ncBAF) complex
122023775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
122023775
NCBI-ProteinID:
XP_042438022
LinkDB
All DBs
Position
9B:complement(321628..328573)
Genome browser
AA seq
788 aa
AA seq
DB search
MSPASPSDRLRSLADSRLKWRKRKRDANRRRQKPHEDEEDEDEDDEDAAVPVGGDAEEVG
RNSSPIPAAADPVLDLRESEVLSDGGQRISDLPTAFRRTVNRPHTSVLALVAAERSNSAA
RSWSPPFLENISHGQLQVLSAVLPDNPSLQQPPDLDKPSTYVCTPLPLMEGKGMIKRLDK
DQLLIVPMHSDWFSPSTVHRLERQVVPHFFLGKSNDHTLEKYIGLRNKIISKYLENPGKR
LSFADCQALVPNNDLYDLSRIVRFLDHWGIINYLAASSVHRGLRMAGSLLREDANGELQL
QTAPLRSIDSLILFDRPKCSIRLEDVALLSHSGQDSDALVGDLDARIRERIAEHTCNFCS
CPLTKLHYQSQKEVDIMLCSNCFHDAKFVTGHSSLDFVRMDSVKENSDLEGDSWTDHETL
LLLEAMEKYNDNWNEIAEYIGSKSKAQCILHFLRLPMENGLLESIELQHFPPPSESLDRQ
DDFILSSNSNGKIAGNHDLGSANSLPFINSSNPVMSLLAFLTSSVGPRVAAACASAALSI
LTRDDSRNGSENSHADVDTHAPHASFSHQKDGTAEGQLPHSKNGSTLLSSELVEHAAMAG
LSAAAMKAKLFADQEEREIQRLAATIINHQLKRLELKLKQFAELETLLLKECEQAERMRQ
RLSAERSRMMTSRFGASPNSVPSPGGAAPAGAAAAAVAMGANPIPGQTPMVAPATGQASF
GNNLNPGHRQMPLMQRQQMFGLGPRLPLSAIHPAPASQNAGFNSAIPNSSTPNHHPLSRS
SSSGNTRI
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccggcttcgccttcagatcgccttcgctccctggcagattcccggctcaaatgg
cggaagaggaagcgggatgccaatcgcaggcgccagaagccacatgaagacgaggaggac
gaggatgaggacgatgaggacgccgcagtacccgtcgggggagacgcggaggaggtcggc
cgcaattcttctcccattcctgctgcagctgaccccgttctcgaccttagagagtccgag
gtcctatctgacggtggccagcggatctctgatcttcccactgctttccgacgcaccgtt
aatcgtccacacacttccgtcctcgcccttgtggccgccgagcgctccaactctgccgcg
cgctcatggtctccgccgttcctggagaacatttctcacggacaacttcaggtcctctca
gcggtgctccccgataacccttcactacagcagccaccggacctggataagccctccact
tatgtatgcacgccgctgccactcatggaagggaaaggcatgataaagcggctcgacaag
gaccagctcctaattgttccgatgcactccgattggttttcaccaagcactgtccaccgg
cttgagagacaagtggtgccacacttcttcctgggaaaatccaatgatcacactctagag
aagtacataggccttcggaacaagataatttccaaatacttggaaaatccagggaagagg
ctttcatttgctgattgccaagccttagttccaaacaacgacctttacgatcttagtagg
attgtgaggtttttggatcactgggggatcattaactatctggctgcttcttcagtccac
cgcggccttaggatggctggatcccttctcagagaggatgccaatggtgagcttcaactt
caaactgcacctttgaggtccatagacagtttgattttgtttgatagaccaaaatgcagc
atcagactagaggatgttgctttgctctctcactctgggcaagattctgatgctttagtt
ggagatttagatgcaagaattagagaacgtattgctgaacatacctgcaatttctgctct
tgccctctgaccaaattgcactatcaatcacagaaggaggtggatataatgctgtgctcg
aactgcttccatgatgcaaaatttgttactgggcactcaagcttagattttgtaagaatg
gactctgtaaaggaaaattcagatcttgaaggggatagctggacagatcacgaaactttg
ctgttgcttgaggccatggagaaatataatgacaactggaatgaaattgcagaatacatt
ggttccaagtctaaggcacaatgtattttgcattttcttcgtcttccgatggaaaatggc
ctactggaaagtattgaacttcaacattttcctcctccatctgaatctcttgatagacaa
gatgattttattttatcttcaaattctaatggtaaaattgcaggtaatcatgacctcggc
agtgccaactcacttccatttattaattcttccaatccagtcatgtccctgttagccttc
ttaacctcctcagttggaccaagagttgctgcagcatgtgcaagtgcagcattatctatc
ttgaccagagatgactcaaggaatggatctgagaattcacatgctgacgttgatactcat
gcacctcatgcaagcttcagtcatcagaaagatggtactgcagaaggtcaattgccacat
tctaaaaatggttctactttgctttcctctgaacttgtagaacatgctgcaatggctggc
ctatctgcagctgcaatgaaagcaaaattatttgcagatcaagaggaacgtgaaattcag
agattggctgctactatcataaatcatcagctgaaaaggttggaactgaagctgaagcag
tttgcggagctagaaactctattgctcaaggaatgcgaacaggcagagaggatgagacaa
cgactctcagccgagcgcagtcgaatgatgacctcccgatttggagcctcaccaaacagt
gtaccatcacctgggggagcagcaccagcaggtgctgcagcagctgctgtagccatgggc
gctaatccaatacctggccagacacccatggtcgctccggcaactggacaagcttccttc
ggcaacaatcttaatcccggccatcggcagatgcctttgatgcaacgccagcaaatgttt
ggtttggggcccaggttaccgttgtctgctatccacccagctcctgcctctcagaatgct
gggttcaactcggcgataccaaacagttccacgcctaaccatcatccattgtcaagatca
tcatcgtcagggaatactcgaatatag
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integrated database retrieval system
