Zingiber officinale (ginger): 122023923
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Entry
122023923 CDS
T08725
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122023923
03410 Base excision repair
122023923
03420 Nucleotide excision repair
122023923
03430 Mismatch repair
122023923
03440 Homologous recombination
122023923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122023923
03400 DNA repair and recombination proteins [BR:
zof03400
]
122023923
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122023923
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
122023923
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
122023923
MMR (mismatch excision repair)
DNA polymerase delta complex
122023923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
divDNApol
Motif
Other DBs
NCBI-GeneID:
122023923
NCBI-ProteinID:
XP_042438291
LinkDB
All DBs
Position
9B:complement(116451302..116467082)
Genome browser
AA seq
1099 aa
AA seq
DB search
MAGGNGKRRGVQHSTPPNPPKRSQFDRQNPQPQQPLPTNESAAEEEMMDEDVFLDETMYQ
EDEEALILLRDEALSSRLSKWKRPALSPSYLSGSENIVFQQLEIDYVIGESHKELLLSSS
GPSAILRIFGVTREGHSVCCHVHGFEPYFYIKCPMGMGPDDISRFHQTLEGRMRESNRNN
NVARFIRRIELVQKKSIMCYQKDQSHPFLKIVVALPTMVASCRGILEKGITIEGIGSRNF
DTYESNILFALRFMIDCNIVGGNWIEVPAGSYRKVIKSMSYCQLELDCLYSELISHTPEG
KYSKMAPFRILSFDIECAGRKGLFPEPTHDPVIQIANLVTLQGDDHPFIQNVMTLKSCSP
IVGVDVMSFDTERDVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAAALKIGEFPTLG
RIRNSRLRVRDTTFSSRQYGVRESKEVTVEGRVQFDLFQAMQRDYKLSSYSLNSVSAHFL
GEQKEDVHHSIISDLQNGNPETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVP
ISFLLSRGQSIKVLSQLLRKAKQRNLVIPNVKGQGSAQESFEGATVLEANTGFYEKPIAT
LDFASLYPSIMMAYNLCYCTLVKSEDAHRLNLPAESVNKTPSGEIFVKPELQKGILPEIL
EELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSV
TSYGRQMIEHTKKMVEEKFTTSGGYDHNAEVIYGDTDSVMVQFGVPSVEEAMKLGREASE
YITGTFIKPIRLEFEKVYYPYLLISKKRYAGLYWTKPDSFDKMDTKGIETVRRDNCLLVK
NLVNECLHKILIDRDIPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGSDYNVKSAHV
ELAEKMRKRDAATAPNVGDRVPFVIIKGTKDAKAYEKSEDPIYVLENNIPIDPQYYLTNQ
ISKPLLRIFEPILKNASKELLQGSHTRSVSISTPSNSGIMKFAKKQLSCLGCKAVISNQE
QTLCSHCKGREAELYCKTVSNVSELEMLFGQLWTQCQECQGSLHQDVLCTSRDCPIFYRR
KKAQKDMAEARSQLDRWSF
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcaacggcaagcggagaggggtgcagcattcgacgccgccgaacccgccg
aagcgatcgcagttcgaccgccaaaaccctcaaccgcagcaaccgttgccgacgaatgaa
tcggcggcggaggaggagatgatggacgaggatgtgttcctggatgagaccatgtaccaa
gaggacgaggaggccctcatcctccttcgcgacgaggccctctcgtctcgcctctccaag
tggaaacgccctgcactctccccctcttatttatccggctccgaaaacatcgtttttcag
cagcttgagatcgattatgtcattggggaaagccacaaagaactgttgcttagctcatct
gggccttcagcgattctcaggatctttggcgtcacgagagaaggtcacagtgtctgctgt
catgttcacggttttgagccttacttttatataaaatgccctatggggatggggcctgat
gatatctctcgcttccaccaaacactagaggggagaatgagagaatcaaatcgaaacaac
aatgtagcaaggttcattaggcggattgagttggtgcagaagaagagcattatgtgttac
cagaaagatcagtctcatccttttctgaagatcgtggttgccttacctactatggttgcc
agttgtcgtggtattcttgagaagggtattacaatcgaaggcattggttcaaggaatttt
gacacatacgaaagcaacattctttttgcacttcgattcatgattgattgtaacattgtt
ggtggaaattggatagaagtccctgctggaagttatagaaaggtgatcaagagtatgtct
tattgccaactggaacttgattgcttatattctgagctgatcagtcatactcctgaaggg
aaatactcaaaaatggctccgtttcgaatattaagtttcgatatcgagtgtgctggtcgt
aaaggactctttcctgagccaactcatgatcctgtgattcagattgcaaatttagtcacc
cttcaaggagatgatcatccttttatacaaaatgtcatgactcttaagtcatgttctcca
attgttggagttgatgtgatgtcatttgatacggagcgggacgttttactggcttggagg
gatttaattcgtgaggttgacccggatattataattggatataacatatgcaaatttgac
ttgccttatcttattgagagagctgcagcccttaagataggtgagttcccaacacttggt
cgcataagaaacagccggctacgtgttagagatacaacattctcatcgaggcaatatggc
gtgagggagagcaaggaagttacagtggagggaagagtccagtttgatctgtttcaggct
atgcaaagggattacaagcttagttcatattctcttaattcagtctcagcacattttctc
ggggagcaaaaagaagatgtgcatcattcaataatatctgacctccaaaatggtaatcca
gaaactagaagacgactagctgtctactgtttgaaggatgcttatcttccacaacgactt
ctggacaaattgatgtacatttacaactatgtggagatggcacgagttactggtgtgcca
atatcatttttgctttcaagaggccagagcatcaaggttctttctcaactcctaaggaaa
gctaaacagaggaatcttgttattccaaatgtcaaagggcaaggatctgctcaagaatct
tttgaaggtgcaactgtgttggaggcaaatactggtttttatgagaagcccattgcaact
ttggactttgcttctttatacccatccatcatgatggcatacaatttgtgttattgcaca
ttggttaaatcagaagatgcccataggttaaacttgccagcagaaagtgtaaacaaaact
ccatctggtgaaatttttgtcaaacctgaattgcaaaagggcatacttcctgaaattcta
gaagagctattgactgcacgtaagagagcaaaagctgatctgaaggaagctaaagatcca
tttgagaaggctgtactggatggacgccagttggctttgaaaataagtgcaaactctgta
tatgggtttactggagctactgttggtcaattaccttgtttagaaatttcttctagtgtg
acaagctacggtcgacaaatgattgagcacacaaagaagatggtagaagagaaatttact
acaagtggtggttatgatcataatgcagaggttatttatggggacactgactctgttatg
gtacaattcggtgtgccttctgtagaggaagcaatgaagttaggaagagaagcatcagaa
tatattacaggaactttcataaagcccattaggctagaatttgaaaaggtctattatccc
tatttgctaataagcaagaagagatatgctggattgtactggacaaagcctgatagtttt
gacaaaatggacacaaaaggcatcgagacagtcagaagagacaactgtttgttggtaaag
aatctggtaaacgaatgcctacacaagatactaattgaccgagatattcctggcgcagtt
caatatgtgaagaacacaatttcagatcttttaatgaaccgtgtggatttgtctcttttg
gttataacaaagggtctgaccaaaactggaagtgattataatgtaaagtctgcacatgtt
gagcttgctgaaaagatgcgaaaaagggatgcggcaactgctcctaatgttggtgaccga
gttccatttgttataattaaaggaacaaaagatgccaaggcttatgagaagtctgaagat
ccgatttatgtccttgagaataatattccgatagaccctcaatactatctgacaaatcag
attagcaagccactcctaagaatatttgagcctattctgaaaaacgccagtaaagagctt
cttcagggaagtcatacgagatctgtatctatttcaacgccttcaaacagtggtataatg
aaatttgccaagaaacaacttagctgtcttggatgcaaggcagtcatcagcaatcaagaa
caaacactgtgctcgcattgcaagggaagagaagctgagttatactgcaaaactgtatca
aatgtttctgaattggagatgctttttggccaattgtggacacagtgccaagaatgccaa
ggctcacttcaccaagacgtgttgtgcacaagccgggactgcccgatcttctatcgaagg
aagaaagcacaaaaagacatggccgaagctaggtcacaacttgatcgctggagtttctaa
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