Zingiber officinale (ginger): 122023929
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Entry
122023929 CDS
T08725
Name
(RefSeq) DDB1- and CUL4-associated factor homolog 1-like isoform X1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
zof01001
]
122023929
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122023929
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122023929
Protein kinases [BR:
zof01001
]
Serine/threonine kinases: Other
Other
122023929
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122023929
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANAPC4_WD40
WD40_Prp19
WD40_CDC20-Fz
LisH
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WD40
Motif
Other DBs
NCBI-GeneID:
122023929
NCBI-ProteinID:
XP_042438303
LinkDB
All DBs
Position
9B:112172182..112191165
Genome browser
AA seq
1940 aa
AA seq
DB search
MAEERAAAAAVAVAAAAADTPAEAPKVDGKEDEAILARAQKLISKIVETQVNPNPRHLHA
LATILEAQESRYLEETANSPFNNIRSSHNIGRLGNLVQESDEFYDLISTKFLTESVYSLS
IRAAAARLLISCSSCWMYPHVFEDAVLDNVKSWVILDMVVSDDNCIWKRELGEDKPTDSE
MLRTYSTGLLALSLASSSQVVEDMLTSELSTKLMRYLRTRHFGDSNSCTAETNHPSSSSS
IRARDEARGRSRLGSSRIGDRRLSANPDTDRDDVIKQGQGDHSWGDGSESQKSVLTDSSS
ELVSANNLIEESPGATADGRQKINSGPINSKSECSPGSSALCVDADDKGVNGTCIVNHGL
PKSEVNARITEVTPENENSPSPSCGAHLEGMSRPSRERNFSQQDDNGNVVIAKDNSDMLD
CNDSIIEEDNDERLQDCIVGKRDISNMVKKALRAAEAEARTANAPIEAIKAAGDAAAELV
KTAAMEAWKSTNDEEAAVLAASQAASTVVEAALTTEISRNASRVTNEIMEKPLEAKEEVD
RENFTIWETEHLARLRDKYSIQCLEYLGEYVEALGPILHEKGVDVCLALLQRSCRDREAS
SELLLLPEVLKLICALAAHRKFAALFVDRGGIQKLLSVRRDIHTFFGLSSCLFTIGSLQA
IMERVCALPSAVVHQVVELALQLLECAQDLARKNAAIFFAAAFVFRAILDSFDSQEGLQK
MLNILHTASSVRSGGNSGALGVPNASARNDRSPGEVLTSSEKQIAYHTCVALRQYFRAHL
ILLVDSLRPNKSSRGIARSNSNARAAYKPLDISNEAMDSVFLQIQRDRKLGPTFVRTRWA
VVDKFLAFNGHITMLELCLAPSVDRYLHDLAQYALGVLHIVTLVKDSRKLIINASLNNNR
VGMSVILDAANGVGYVDPEVIHPALNVLVNLVCPPPSISNKPSVAAQGQQPVSVQTWNGP
SENREKHYERNNSDNVAAFAVQNETRERNAEPGSSSNTPAPSMSAGVVGDRRISLGSGYG
SAGLAAQLEQGYHQAREAVRANNGIKILLHLLNPRMITPAAALDCIRALACRVLLGLARD
ESIAHILTNLQVGKKLSELIRDLSSQVSGTGQSRWQSELIQVSVELIAIVTNSGRASTLA
ATDAAAPTLRRFERAAIAAATPITYHSRELLLLIHEHLLASGLTATAALLQKEADLTPLP
SLGAPAPPLHQTNIQETMSVQFLWPSGRAPGGFLVDFTKIASQDDESCLKSNLAFSSLKR
KQSRYASKSSHGKGQLSSHASSNARASSLSKATALCSGAETPSVSFPKATSETEVPLRTP
ICLPMKRKHLELKNSSDATPAKRLAIMDPSSQSPLFQTPYSCRKNFLPMDTGSLSPFVYQ
SPGEPFSRTSFNNIIGDTPDDIRCQITPGMPLTSIPQPGPLGNSQLGNTERMTLDSLVVQ
YLKHQHRQCPAPITTLPPLPLLQPHICPEPSHSLRAPANVTARVSNREFRKQYGGVYAHR
NDRQYIYSRYRHCRTCRDETTLLTSLTFLGDSSRIATGSHSGELKIFDSNSGNLLESQTC
HQSSITLLQSALSGGNHLVLSSSFHDVKLWDASSILGDPLHTFASCKAARFSHLGTSFAA
LSSEASRREVFLYDVQTFTQELKLSDNRSFQSGTVRGHAQSLIHFSPMDTMLLWNGTLWD
RRTSHAIHRFEQFTDYGGGGFHPAGNEVIINSEVWDLRKFKLLRTVPSLDQTVITFNGGG
DVIYAILRRNVEEITSAINARRVRHPLFPAFRTIDAVNYLDIATVQVDRCVLDFATDPTD
SFVGVIAMDDHEEMFSSARVYEVGRKRATDDDSDPDDGGESDEDEDENEESDDVDIDSIF
EADLAGEGDSSDDLSNEDDEDGDSADDLDEDGDVNYDDLDDFEAAQGMLEIMAVGDEDAD
VDDDSEVLESLSSYEEGDFA
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagcgggcggcagcggctgcggtcgcggttgcggcggcagcagcggatacg
cctgcggaagcgcctaaggtggacgggaaggaggacgaggcgatcctcgctcgagcgcag
aagctgatatccaagattgtcgagacgcaggtcaaccccaaccctaggcacctccatgcg
ctggccacgattctcgaggcccaggaatccagatatcttgaggaaactgcaaattcacct
ttcaacaacattaggtcatctcacaacattggaaggttgggtaacttagttcaggagagt
gatgaattttatgacttaatatcaaccaaattcttaacggaaagtgtatattcgctgagt
atacgtgctgctgctgctaggttgttaattagctgttcttcctgttggatgtatccacat
gtttttgaggatgcagtgcttgacaatgtcaaaagttgggtcattttggatatggtagtt
tctgatgataactgcatttggaaacgtgaactgggagaggataagccaactgattctgag
atgctgaggacttattctactggacttcttgctttatctttggctagtagcagtcaggta
gtggaagatatgctgacatcggaattgtcaacaaagctcatgcgatatctgcgcacgcga
cactttggcgactctaactcttgtactgctgagactaaccatccttcatcttctagttcc
atcagagcaagagatgaagctagaggtagatctcgcttggggagttcaaggattggtgac
cggaggctatcagctaatccagatactgatagggacgatgttattaaacaaggtcaagga
gatcattcttggggagatggaagtgagtcacagaaatctgtactaactgattcttcatca
gagttggtcagtgcaaacaatttgattgaggaatctccaggtgctactgctgatggaagg
cagaagataaattcagggcctataaattcaaaatctgagtgttctcctggatcatctgcc
ctatgcgttgatgctgatgataagggggtgaatggaacttgtatagtaaaccatggattg
ccaaagagcgaagttaatgcaaggattactgaagttactccagaaaatgaaaacagtcca
tctccatcttgtggagcacacttagaaggaatgagtcgaccttctagggaaagaaacttc
agtcaacaggatgacaatggaaatgtagttattgcaaaagataactcagacatgcttgac
tgcaatgattccatcattgaagaggataatgatgaacgattacaagattgtattgttggc
aaaagggacatatctaacatggtgaaaaaagcattaagagctgctgaagctgaagccaga
acggctaatgctcctatagaagctataaaagcagctggtgatgcagcggctgaacttgtc
aagactgctgctatggaggcgtggaaaagcacaaatgatgaagaagctgcagttctggct
gcatctcaagctgcatctactgttgttgaagctgctttgacgactgagatttcacggaat
gcgagtcgagtaaccaatgaaattatggaaaagcctcttgaagccaaagaggaggttgat
agagaaaatttcactatatgggagactgagcatcttgcaaggctgagagacaaatactcc
attcagtgccttgaatatttgggggaatatgttgaagctctaggacccattctacatgaa
aagggtgtagatgtctgccttgcactcttacaacgcagctgtagagatcgtgaagcttct
tctgaactcctattgctgcctgaagtcctcaagctgatatgtgccttggctgcacacagg
aaatttgctgccttatttgttgatcggggaggaatacagaaacttctctctgttcgcagg
gatatacatacattttttggtctttcttcatgtttgtttaccattggttcccttcaggct
attatggaacgtgtttgtgctctgccgtccgctgtggtgcatcaggtggttgagttagct
cttcagctactggaatgtgctcaagatctagcaaggaaaaatgcagctatattttttgct
gctgcatttgtcttcagagcaattctggattcctttgattcacaagaaggccttcagaaa
atgttaaatattttgcatactgcatcgtctgttagatctggtgggaactctggtgcttta
ggtgtacctaatgcatctgcaagaaatgatcgatcacctggtgaagtactgacttcatca
gaaaagcagattgcttatcacacttgtgttgcactgcgtcagtattttagggcccatctt
attcttcttgtggattcacttcgcccaaataaaagtagtcgaggtatagccagaagtaac
tcaaatgcgagggctgcttataagccacttgacatcagcaacgaagccatggattctgtt
tttcttcaaatacagcgtgacagaaagcttggccctacatttgttaggacccgttgggca
gttgtggataagttcttagcctttaatggccatataacaatgttagagttgtgtctggcc
ccatctgttgatcggtatcttcatgatttggctcaatatgcattaggtgttctccatatt
gtcactttggtaaaagatagtcgtaaactaatcataaatgcttctttgaacaataaccga
gtgggcatgtcagttattcttgatgcagctaatggtgttggttatgttgatcctgaggtg
attcatccagccttgaatgtgttagtaaatcttgtatgtccacctccttcaatcagcaac
aaaccttctgtggcagcccaaggtcagcagcctgtttcagttcaaacatggaatggtcct
tcagaaaatagagagaaacattatgaaagaaataactcagacaatgttgctgcatttgct
gtccagaatgagacgcgggagagaaatgcagaacctggttctagctcaaacacccctgca
ccttctatgtccgcaggagtggttggtgaccgaaggatatctttaggatctggatatggg
tctgctggccttgctgctcagttggaacaaggatatcatcaggctagggaggctgttcga
gccaacaatggcatcaaaattctgttgcatcttctgaaccctcggatgattacacctgcg
gctgctcttgactgcatcagagctttagcatgtcgtgtattgcttggtttagcaagagat
gaatcaattgcacacatattaacaaatctgcaggtcggtaagaagctttcagaacttatt
cgagatttgagcagccaagtatccggaactggacaatcaaggtggcagtctgagttgatt
caagtttctgttgagttgattgcaattgtaacaaattctgggcgtgcaagcaccttggca
gccactgatgctgctgctcctacacttaggcgctttgaaagagcagcaatagctgcagca
actcctataacttatcactccagagagctgttattgctgatacatgagcatctactggca
tctggtttaactgctacggctgccttgctacagaaggaagctgacttgacacctttgcca
tcattaggagcaccagcaccaccattacatcaaacaaatatccaggaaactatgtctgtg
caatttctgtggccatctggtcgtgcacctggtggattcctagttgattttacaaagata
gcttctcaagatgatgaaagttgtttaaagtccaatttagcttttagttctttgaaaagg
aaacagtccaggtatgcttccaagtcctcccatgggaaaggccaactttcatcacatgca
tcatccaatgctagagcatctagtctttcaaaagcaactgcactttgcagtggagcagaa
acaccatctgtatcatttcccaaagctacttcagaaacagaagtgccacttagaacacca
atttgtttaccaatgaaaaggaaacatttggagttgaagaactcttcagatgcaacacca
gctaaacgtcttgcaataatggacccatcttctcaatctccattatttcagacaccatat
tcttgtaggaagaattttctgccaatggacactggaagcttgtccccctttgtatatcag
agtccaggagaaccattcagcagaacatcattcaacaacattattggagatacaccagat
gacattcgatgtcagatcacacctggaatgccattgacatctattcctcaacctggcccg
cttggtaactcacaattaggaaacactgaaaggatgacacttgactcattggtggtgcaa
tatttgaagcatcaacatcgacagtgcccagctcctattaccactttgcctccacttcct
cttttgcaaccacacatctgcccagaacctagccatagcttgcgtgcacctgcaaatgta
acagcacgtgttagtaatcgagagttcaggaagcaatatggtggggtttatgctcatcgt
aatgaccgtcaatatatatacagcagatacaggcattgtcgcacttgccgtgatgaaact
acacttctaacatctcttactttccttggggactcttcacgtattgcaacagggagccat
tccggtgaattaaagatatttgattcaaacagtggcaatttattagagtctcagacctgc
caccagagttctattacactgcttcaatcagccttgtctggtggaaaccacttggttctc
tcttcttcctttcatgatgtcaagctgtgggatgcttcatccatattaggagatcctttg
catacatttgcaagttgcaaagctgctcgctttagtcatttaggtaccagctttgcagcc
ttatcatcagaagcatcgcgccgagaggtttttctatatgatgtgcaaactttcacacaa
gagttgaaactttctgataaccgaagtttccagtcaggcacagttcgagggcatgcccaa
tcacttatacactttagccctatggatacaatgttactatggaatggaactttgtgggat
aggagaacttcacatgcaattcatcggtttgaacagtttactgattatggtggaggtgga
tttcatcctgctggaaatgaggttatcataaattcagaggtgtgggatctccggaagttc
aagcttctgagaacagtaccatcattggaccagacggtgattacttttaatggtggtggg
gatgtcatttatgcaatcctgaggcgcaacgtggaagagattacttcagccatcaacgca
cgtcgcgttcggcacccactgtttcctgccttccgcaccattgacgctgtgaattactta
gacattgcgactgtccaggttgaccgatgcgtcctagactttgccaccgatcctacagac
tcttttgttggtgtcattgccatggatgaccatgaagagatgttctcatctgctagggtc
tacgaggttggaaggaagcgtgccaccgatgatgattcagacccagatgatggtggtgag
tcagacgaggatgaagatgaaaacgaggaatcggatgatgtggatatagattcaatcttt
gaggctgatttggccggtgaaggtgactcctcagatgatctgagtaatgaggatgatgaa
gatggcgacagtgcagatgatctcgacgaagatggtgatgtcaactacgatgatcttgat
gattttgaggcggctcaaggaatgcttgagatcatggccgtgggggatgaggatgcagac
gtggacgacgacagtgaggttcttgagtccctcagtagctatgaggaaggggattttgcc
tga
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integrated database retrieval system
