Zingiber officinale (ginger): 122023959
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Entry
122023959 CDS
T08725
Name
(RefSeq) spastin-like
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122023959
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
zof04812
]
122023959
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
122023959
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
122023959
Cytoskeleton proteins [BR:
zof04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
122023959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
AAA_16
AAA_22
NPHP3_N
AAA_14
Vps4_C
TIP49
AAA_2
DUF815
AAA_25
Mg_chelatase
nSTAND3
TniB
Guanylate_kin
bpMoxR
IstB_IS21
RNA_helicase
AAA_17
AAA_33
nSTAND6
ABC_tran
MIT
Motif
Other DBs
NCBI-GeneID:
122023959
NCBI-ProteinID:
XP_042438346
LinkDB
All DBs
Position
9B:13914572..13920543
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AA seq
476 aa
AA seq
DB search
MSLLRDLVDSFSGFFSPSADHSPPSSSTNGATDSLPSAAPPDVVAERVALKLKGYFDLAK
EEIDMAVRAEEWGLADDAIAHYRNAQRVMLEAKAVRVPDVLSLREKSQANTYRQKISKWQ
QQVADRLQVLSLRTAEPSTKPYPSTSSSRPTMSRVPTARKATKILPSQKNGIENSKPVSK
NQDSRLVEMINTAIVDRSPAVKWDDVAGLDKAKQTLMEMVILPTKRRDLFTGLRKPARGL
LLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLVRTLFEVAVARQPSVI
FMDEIDSVLSNRVANENDASRRLKSEFLVQFDGVTSNQNDLVIVIGATNKPQELDDAVLR
RLVKRIYIPLPDENVRKLLLKNQLKGRAYSLPSGDLEKLARITDGYSGSDLQALCEEAAM
MPIRELDPQNILTISASQVRPLRFGDFQKAMVVIRPSLQKSKWEELQRWNEEFGSN
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcctccgtgatctggtcgattccttctccggattcttctccccctcagctgac
cactcgccgccgagctcctccaccaacggcgccacggattcccttccctccgccgcgcct
cccgatgtcgtcgccgagcgcgttgccctcaagctcaagggatacttcgatctggccaag
gaggagattgacatggccgttcgggccgaggagtggggccttgcagacgacgccatcgct
cactaccgaaacgcgcagcgcgtcatgctcgaggctaaggccgtccgagtcccagatgtc
ctctctttgagggagaagagccaggctaacacctatcggcaaaagatatccaaatggcag
cagcaggtcgcggatagactacaggtgctatcgctgaggacagctgagccgtccactaag
ccctacccaagcactagttcaagcagacctaccatgtctagggttcctactgcacggaaa
gctacaaaaatcttgcctagtcagaagaatggtattgaaaactcaaaaccagtatccaaa
aatcaggattcccgtctggttgaaatgattaacactgcaatagtggacagaagccccgct
gttaaatgggatgatgttgctggtcttgacaaggccaagcaaactcttatggaaatggta
attttaccgactaaaagaagagacctttttaccggtcttcgaaaaccagctagaggtctt
ctcctctttggtccacctggcaatgggaaaacaatgcttgccaaagctgttgcatcagaa
tcagaagcaacgttttttaatgtttctgcttcatctttaacttcaaaatgggttggagaa
gctgagaagcttgttcgaactctttttgaggttgctgttgctaggcagccatctgtaatc
ttcatggatgaaatagacagtgttttgtccaatagagttgctaatgagaatgatgcaagt
agaaggctgaagtcagagttcctagtccagtttgatggggtgacttcaaatcagaatgat
ttggtaatcgtgattggtgcaactaataagcctcaggaattagatgatgctgttctacgt
aggctggttaagagaatatacatcccactaccagatgaaaatgtgaggaaactactcctc
aagaatcaactaaaaggaagagcatattccttgccaagtggcgatctggaaaaacttgcc
aggattacagatgggtattctgggagtgatttacaagccttgtgtgaagaagctgccatg
atgcccatcagagagttggatcctcagaatattcttacgataagtgctagccaggtgagg
ccattaagattcggagattttcagaaagcaatggtagtgatcagaccaagcttacagaag
agcaagtgggaggagctgcagcgatggaatgaagaattcggttcaaattga
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