Zingiber officinale (ginger): 122024050
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Entry
122024050 CDS
T08725
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1-like
KO
K13103
tuftelin-interacting protein 11
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122024050
Spliceosome [BR:
zof03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122024050
Other components
Complex C specific factors
122024050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GCFC
G-patch
G-patch_2
Sulfotransfer_2
TMPIT
CENP-F_leu_zip
Meis_PKNOX_N
Motif
Other DBs
NCBI-GeneID:
122024050
NCBI-ProteinID:
XP_042438502
LinkDB
All DBs
Position
1A:complement(44662311..44664977)
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AA seq
762 aa
AA seq
DB search
MPSQEVKRDPQEEGDRYAGVPSSGHGLGYGLGFQSNRKDIEDAEDEDGFLSTAVGRRIKE
GAQRREKEKESERGRSKLAKNSSGRRDASGASEMGKFEAHTKGIGSKLMKEMGFKEGSGL
GKNEQGIVAPVEVKLRPKNMGIGFNGYKEAKLPVLDEAPKEKMATPVAAGPSKEKRWLKQ
KRGRAEAEILTVDEPPAKMQEQGIQAVQKVLDMRGPQVQVLTSLDNLNTETEMKENDVPT
PELLQYNVRQIVESTEVDIQKLDQHLRREREKVVCLQEEKDKIMKEVMQQRKQLHVMQTI
ALVLEKVKEDNLSGVLTLDSLLTTLKDLKEIFKDDYKLFNISCIVLSFAYPLFLRVFQGW
QALQNPLLGVNLISSWRDLLQGDQPYDFSENPFSDSYSQLISELILPAVRISVTNTWQAR
DPEPLLRFLEIWEKLLPPVILQSILENVVMPKLTEAVDSWDPQCETVPIHVWVHPWLPLL
GRRLERLYHTIPSKLGSVLHAWHASDASAYAILSPWKDVFDAASWEHLMLRYIVPKLRIA
LQEFQVTPANQELDQFNWVMMWASAIPIHHMVHMLEVDFFSKWQQVLYHWLRSDPNFNEV
MQWYMGWKGVFPAELLATERIRVLLCSGLDMINQAVEGMEVVQPGATENVSYLRAIERQL
EAQQKAPAYFSVHVINVNAAGGVHELSFKESIEAYAMEQGWFFKPKVGRYYNDRPVYGFG
NISICIDSVKKLLYARVNGSTERWSAVTLTQLQEMHRNTSRH
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgcccagccaggaagtcaaacgggatccccaggaagaaggggaccgatacgctggcgtt
cccagttccggccacgggttgggatatgggctagggtttcagtccaacagaaaggatatc
gaagatgctgaggacgaggatggcttcctctctacggccgttgggaggaggattaaagaa
ggtgcccagcgccgtgagaaggagaaggagtctgagagggggagatcgaaattggccaag
aattcttctgggagaagagatgcatctggcgccagcgagatggggaagtttgaggcgcac
accaagggaataggttcgaagctgatgaaggagatgggattcaaggaagggtctggattg
gggaagaatgaacaaggcatagttgccccggtagaagttaagctccgtccaaagaacatg
ggcatagggttcaacggctacaaggaggctaaattgcctgttttggatgaagcaccaaag
gaaaagatggctactccagtggcagcaggaccttcaaaggagaagaggtggttaaagcag
aagcgaggaagagccgaagctgagattttgacggtggacgagccgccggctaaaatgcag
gaacagggaattcaggctgttcagaaggttcttgatatgaggggaccacaagttcaggtt
ttgacgagtctggataatttgaacacggagactgagatgaaagagaatgatgtgcccacg
cctgagctgctccagtataatgttagacaaattgtggaatctactgaggttgacatacaa
aagctggaccaacatttgagaagggagagggagaaggtggtgtgcttacaggaggaaaag
gacaagattatgaaagaggtgatgcagcagaggaagcaacttcatgttatgcagacaatt
gcattagtattagaaaaggtaaaggaggataacttatcaggggttttgacgcttgattcg
ctgctaaccactttgaaagatctaaaagagatcttcaaagatgactacaagctctttaat
atttcctgtattgttttatcatttgcatatcctctgtttctcagggtgtttcaaggatgg
caagcattgcagaatccattgcttggcgtgaatcttatatcttcttggagagatttgttg
caaggagatcagccttatgatttttcagaaaatcctttttctgattcttattcccagctt
atcagtgaacttattcttcctgctgtgaggatatctgtgactaacacttggcaggctagg
gatcctgaaccactgctccggtttctggaaatatgggagaagttactgccaccagttatt
ttgcagtcaattctagaaaatgtggttatgcctaagctaacggaggctgtcgattcatgg
gatccacaatgcgagactgttcctattcatgtttgggttcacccatggcttccattgcta
ggacggagattggagaggttgtatcatacaatcccttctaagctaggtagtgtcctccat
gcttggcatgcaagtgatgcatcagcatatgccatactttctccatggaaggatgtgttt
gatgcagctagttgggagcatctgatgctacgctatattgttcctaagttgagaattgct
cttcaagaattccaggtgactccagctaatcaggagttagaccagttcaattgggtgatg
atgtgggcatctgcaatcccaatccaccatatggttcacatgctggaggttgattttttc
agcaagtggcagcaagttttataccattggttgcgctcagatcctaattttaatgaggtt
atgcagtggtatatgggctggaagggtgtcttccctgcagaattacttgccactgagagg
attcgagtgcttctatgttcaggtttggatatgattaaccaggctgtagaaggcatggaa
gtggttcaacctggtgctacagagaatgtcagctatctgagagcaatagagagacagtta
gaagcacaacagaaggctccagcttatttctcagtccatgtcattaatgtcaatgctgct
ggtggtgttcatgaattgagcttcaaggaatccattgaagcttatgcaatggagcaaggc
tggttcttcaaaccaaaagttggtagatattacaatgatcgcccagtgtatggatttggt
aacataagcatttgcatagattcagtgaagaaattgctctatgcccgagtcaatgggagt
actgaacgttggagtgctgtgacgcttacacagttacaggagatgcaccggaatacctca
cgacattga
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