KEGG   Zingiber officinale (ginger): 122024076
Entry
122024076         CDS       T08725                                 
Name
(RefSeq) uncharacterized protein LOC122024076 isoform X1
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    122024076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:zof03009]
    122024076
Ribosome biogenesis [BR:zof03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    122024076
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_TEP1_2nd Beta-prop_EML Utp12 ANAPC4_WD40 EIF3I WD40_MABP1-WDR62_1st PQQ WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_IFT122_1st PQQ_2 Beta-prop_WDR19_1st Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 122024076
NCBI-ProteinID: XP_042438544
LinkDB
Position
9B:84436012..84443178
AA seq 652 aa
MAINFHDVRGLLAAFSPSSEFFAISSGDGRIKIWDTIKGQLQTEFSDLSPSDASSLLSQP
KSGHLSLDYTCMKWVPLERKKKRKSGSSLLVLGTGNGDVLALDVSAGQLKWKISDCHPGG
VNAVCFSEFHRSVYTTGVDGMVCEIDAAKGSLIGKFRAFTKSISSMAVSADGKILATASG
QLKTFGCSDNKKLQKFSGHPVAVRCMIFSQDGQYIMTSGVGERHIAIWKVGGDKKQSASC
ILSMEHPAVFLDGKDVQKDEKFGEGFSVLAISEVGMGYFWYGSNLEELRHSQPTKISVFM
EPKINDLGIYGAKLLDSAKAASGHVFLAYGSLVKPSFQKLLVHYGTDIKLDDSKGGILLP
IDSFPHPQKPQMRSMKGTVTALDRTNAEHAVLPIPKLHTHDKKRKHSMAKSTADIEDAIT
DPIIKEVKKQSTDRRVVLQRMEKDTICLEDKLRELGFISDNDCSKEASDPSSPTSTSLDL
YSGDMISSDAKISSRKIRLHVSSMNSADAYNFLEDLISAWRKRTPGLKNVLQWIYYILLM
HGQFVASKDSSAGMLDGLQKASKNMIRLRCASINHLLKLSGRIRLIMTQIDKIGKKVSMD
EHLGEGGKMLSDDDEDVGFDDENNEDEEIDEMLYGEDESNSDDDDDHELGQT
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggctatcaactttcatgacgtcagaggtctcctagcggccttcagcccctcttcagag
ttcttcgccatttcttcgggtgacggtcgtattaagatatgggacaccataaaaggtcag
ttgcagacggagttttcagatttatcgccttctgatgcatcaagccttttgtctcagcct
aaaagtgggcacctttcgcttgactatacctgcatgaaatgggttccacttgaaagaaag
aagaaaagaaaatcaggaagctccctcttggtgttgggaactgggaacggcgatgttcta
gcgctggatgtatctgctggacaattgaagtggaaaattagtgactgtcatcctgggggt
gtgaatgctgtttgtttttctgagtttcatcgatctgtgtacacaacgggtgttgatggt
atggtttgtgagattgatgcagcgaaggggagcttgataggaaaatttagggcatttact
aaatcaatttcttctatggctgtttctgctgatggtaaaatattggccactgcatctgga
cagctgaagacttttggttgttctgataacaagaaactacaaaagttttctggacaccca
gtggctgttcggtgcatgattttcagtcaagatgggcaatatatcatgacatctggagtt
ggtgagagacatattgccatttggaaagtaggcggagacaaaaagcaatctgctagttgt
attctctcaatggagcatccagctgtttttctggacggtaaagatgtacaaaaggatgaa
aagtttggagaggggttttctgttctggccatttctgaagttggcatgggttatttttgg
tatggaagtaaccttgaagaattgcgccatagtcagcccacaaagatctcagtttttatg
gagccaaagataaatgatttgggcatatatggagcaaaacttctagattcagctaaagct
gcttcaggacatgttttccttgcttatggttcactagttaagccttcatttcagaaactg
ttggtacattatggaacagacattaaattagatgactccaaaggtggtattcttttgcca
attgacagctttcctcatcctcagaagccacaaatgaggagcatgaaaggaacagttact
gcactagatcgaacaaatgcagaacatgctgttcttccaattccaaagctacatacgcat
gataagaagagaaagcattctatggcaaaatcgactgcagatattgaggatgctataact
gatccaataatcaaggaagtgaaaaaacaatcaactgatagaagagttgtcctgcaaaga
atggagaaagatacaatatgcttagaagataagctgagagaactgggatttatcagtgac
aatgattgttccaaggaagcaagtgatccaagtagtcctactagtacttctctagatctc
tacagtggcgacatgatatcaagtgatgcaaaaatttcttcaaggaagataaggctgcac
gtctcgtccatgaactctgctgatgcttacaatttccttgaagaccttatttctgcttgg
aggaaaagaacacctggtttaaagaatgttcttcaatggatatattatattctgctcatg
catggtcagtttgttgcaagtaaagattcatcagctggaatgctagatggtctgcaaaag
gcatctaaaaatatgataaggttaagatgtgcgtccatcaatcatttactgaagctatcc
ggtagaattcgactaatcatgactcagatcgataaaatcggtaagaaagtatcaatggat
gagcacctcggcgaaggtggcaaaatgctgagcgacgatgatgaagatgttggtttcgat
gatgaaaacaacgaagacgaagagatcgatgagatgttgtatggagaagatgagagtaat
agcgatgacgatgatgaccatgaactgggtcagacatga

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