Zingiber officinale (ginger): 122024389
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Entry
122024389 CDS
T08725
Name
(RefSeq) N-glycosylase/DNA lyase OGG1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122024389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122024389
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
122024389
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
122024389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
Motif
Other DBs
NCBI-GeneID:
122024389
NCBI-ProteinID:
XP_042438940
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Position
9B:317586..321353
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AA seq
419 aa
AA seq
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MLGRTPPRSLGYSPSFPNSLATLAGIMRKARRTTPPPPSTPSPSPPSPPWKERSVLTAPA
ALKPQRSLAAHLSAAASADWELLPLPRSELSLSVTLPTGQTFRWRRTGSSHYTGVVGPHL
LSLQHLESDPAGRVAFVLHNPGSSDSSSARSVLSDFLNVHVSLGDLWDRFSLADARFAEL
ASRFDGGARILRQDPVECVFQFLCSSNNNIGRIEKMVGVLSSYGEYLGTVGGFDFHEFPS
LERLSLVTEQQLREAGFGYRAKYIVGAVKILQGKPGGGAKWLASLRSLELEEVIDALCIL
PGVGPKVAACIALFSLDQHHAIPVDTHVWQIATKYLMPELAGTRLSPKLYKSISEAFVAK
FGEYAGWAQNVLFIGELPSHKASVELCAGENKSANGGKRGRKRAAASLEQDVSRSIVIK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgctaggaaggacaccgccccgctctttagggtactctccgtcgttccccaattcccta
gccaccctcgccggaatcatgaggaaagcgcggaggacaacgccgccgcctccctccacc
ccttctccttctccgccttctcctccttggaaagagagatctgttctcaccgcccccgcc
gcgctcaagccccagcgatctctcgctgctcatctttccgccgcagcctccgccgattgg
gagctgctcccgctaccccgctccgagctttccctatccgtaaccctacccactggacag
accttccgttggcgtcgcaccggttcctcacactacacaggcgtcgtaggtccgcacctc
ctttccctccagcacctcgagagcgaccccgccggccgcgtcgcctttgtcctccataat
ccaggcagctccgattcctcttccgctcggtccgtcctttccgacttcctcaacgttcac
gtgtctctcggggacctctgggaccgtttttcccttgccgatgctcgctttgctgagctc
gcgagccggtttgacggtggcgcccgcatcctccgtcaagacccggtggagtgcgtcttc
cagttcctctgctcctctaacaataatatcggccgcattgagaagatggtcggcgtgctc
tcgtcatatggggagtacctcgggacggtcggaggatttgatttccatgaattcccgtcg
cttgagaggctatctctagtcacagagcagcagctccgagaagctggatttggttacagg
gcaaaatacattgtaggtgcagttaaaattttgcaaggaaaacctggaggaggcgccaag
tggcttgcctctcttcgtagtctggagcttgaagaggtgattgatgctctctgtattcta
ccaggggtgggacctaaggttgctgcttgcattgctcttttctccttggatcaacaccat
gcgattcctgtcgacactcatgtttggcagattgcaaccaaatacctaatgccagagctt
gctggcacgcggttgagtcccaagctgtataagtccatctctgaggcgtttgtggccaag
tttggtgaatacgccggctgggcgcagaatgtgctcttcatcggcgagttaccttctcac
aaggcttctgttgaattgtgtgctggggaaaataaatctgccaacggtggaaaacggggg
aggaaaagagcagctgcttctttggaacaagatgtctcccgttccatcgtcattaagtag
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