Zingiber officinale (ginger): 122024443
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Entry
122024443 CDS
T08725
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122024443
09123 Folding, sorting and degradation
03018 RNA degradation
122024443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122024443
03041 Spliceosome [BR:
zof03041
]
122024443
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122024443
mRNA degradation factors
5'-3' decay
Lsm complex
122024443
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122024443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122024443
NCBI-ProteinID:
XP_042439008
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All DBs
Position
9B:complement(74842567..74849903)
Genome browser
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEESTKSRTDRKPPGVGRGRGRGGREDGIGRSAKGIGRGQD
DGSNKGGGRGRGGVGGKAAGSRGGGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgttatcgcttctgaagactgctcaaggtcatcccatgttggtggagttgaag
aacggggagacatacaatgggcacttggtgaactgtgacacctggatgaatatccacctc
cgtgaggttatttgtacctcaaaggatggtgaccggttttggaggatgcctgagtgttac
attcgtgggaataccatcaagtaccttcgagttccagatgaggtgattgacaaagttcag
gaagagtccaccaaaagccgcacagacaggaagcctcctggagttggccgtggcagggga
cgaggaggtagggaagatggcattgggcggtctgccaaaggcattggacggggtcaagat
gatggaagcaacaaaggtggtggtcgtggtagagggggagttggtggtaaagctgctggt
tccagaggtggagggcgtggccgaggttga
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