Zingiber officinale (ginger): 122024484
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Entry
122024484 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18-like
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122024484
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122024484
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
122024484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Ras_bdg_2
Motif
Other DBs
NCBI-GeneID:
122024484
NCBI-ProteinID:
XP_042439053
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All DBs
Position
9B:complement(11696443..11711364)
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AA seq
649 aa
AA seq
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MAEAENEALNRALTTTRFSDINPSLSVPVLDALALAGFQFCTPVQAATIPLLCSHKDVSV
DAATGSGKTLAFVVPLVEILRRCTSVPKPHQVLGMIISPTRELSSQIYHVAQPFFSTIKN
VKCALLVGGLDIRADKEKIETEGANILVGTPGKLCDVMERLDVLDFRSLEILILDEADRL
LEMGFQKQLTYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVKVEVRVQVKAQGEAS
TQEVASSKTPLGLHIEYMVCEAQKKSTYLVDFLARNMSKKMIVYFMTCACVDYWGVVLPQ
LTELKGCPIISLHGRMKQTAREKALASFTDLSNGILLCTDVAARGLDIPGVDWILQYDPP
QDPNVFIHRVGRTARIGRQGSAIAFLLPKEDDYVEFLQLRRVPLKERTCSDTEFDIIPQI
RAAAKEDRDVMEKGIKAFVSYIRAYKEHHCSYIFRWKDLEIGKLAMGYGLLQIPAMPEVK
HHSLSIEGFSPIHDIDLTQIKYKNKAREKQRQKILLSKQEEEPKQKQVKKKPESAATVMK
KKTGKKRRAIQTKEDAEELDQEYRLLKKLKRGLIDDDEFDKLTGFGEVEEERPSEIDSKP
SGAEVRAASKSSRMKTNQRANARRPGRSNNNNAKKSSTLRSKSKKVRRV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggctgagaatgaggctttgaatcgggcgcttacaactactcgtttctcggat
attaacccttctctctccgttcccgtcctcgatgccctagccctcgctggatttcaattt
tgcacgccggttcaggccgctaccatccccttgctctgcagccacaaggacgtttctgtt
gacgccgcaactggttccggaaaaaccctcgccttcgttgtacctttagtcgagatccta
cgacgatgcacctctgtccctaagcctcatcaggttctaggaatgatcatttctccaaca
agggagctatcatcacaaatataccatgttgcacagcctttcttctcaacaattaagaat
gtcaagtgtgctcttcttgttgggggtctagacataagggcagataaagagaaaattgaa
actgaaggcgccaacatcttagtaggtactccagggaagctgtgtgatgtaatggagcgc
ttggatgtactagatttccgaagccttgagatcctgattctagacgaggcagacagactt
ttagaaatgggatttcaaaagcaactcacttatataatttctcgtttaccaaagctccga
agaactgggcttttctctgctacacagacagaggctgttgaagagctctcaaaggcagga
ttaaggaatcctgtgaaggttgaagttcgagtgcaagtcaaagcacaaggtgaagcgtca
acacaagaagtagcttcctcaaaaacacctttagggctacatattgagtacatggtatgt
gaagcacagaagaagtccacctaccttgttgatttcttggcaagaaacatgtcgaaaaag
atgatagtatacttcatgacatgtgcttgtgttgattattggggtgttgttcttcctcaa
cttactgaactgaaaggttgtcccataatttcacttcatggaagaatgaagcagacagca
agggagaaagcattggcatcttttacagatctttcaaatggtattcttctatgcactgat
gtagcagcaagggggttggatattccaggtgttgactggattttacagtatgatccaccg
caggatcccaatgtatttatacatagggttggccggactgctcgtataggcagacaagga
agtgcaattgctttccttttaccaaaggaggatgattatgtagaattcctgcaactgaga
agagtccctcttaaagagagaacatgctcagatactgaatttgacattattcctcagatc
agagctgcagctaaagaagaccgcgatgtgatggagaaggggatcaaagcatttgtgtca
tacattcgtgcatataaagaacatcactgttcttatatattcaggtggaaagatctggag
attgggaaactggctatgggatatggtttgctgcagatcccagcaatgccagaagtgaag
catcactctctatcgatcgagggtttctcgcccatccatgatattgatttgacacagatc
aagtacaagaataaagccagagagaagcaaagacagaagattttgctaagcaagcaagaa
gaagagcctaaacaaaaacaggtgaagaagaaaccggagtctgctgccactgttatgaaa
aagaaaacaggcaaaaagcgccgcgccattcagaccaaagaggatgcagaggagttggat
caagagtaccgtttattgaagaagctaaagcggggattgatcgatgacgatgaattcgat
aagcttactggctttggggaagttgaggaagaaaggccttctgaaattgattcgaaaccc
tctggtgctgaagttcgtgctgcttctaaaagcagcagaatgaaaacaaatcaaagagcg
aatgcaagaaggccagggagatcgaacaacaataatgctaaaaagagtagtacactgaga
tcgaagtcaaagaaagttagaagggtgtga
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