Zingiber officinale (ginger): 122024538
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Entry
122024538 CDS
T08725
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1-like
KO
K13103
tuftelin-interacting protein 11
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122024538
Spliceosome [BR:
zof03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122024538
Other components
Complex C specific factors
122024538
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
122024538
NCBI-ProteinID:
XP_042439127
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Position
1A:complement(47686570..47690434)
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AA seq
852 aa
AA seq
DB search
MADDYEGSERFGMENDYEGGEWIGGEFYYRSKKERSVQTREDAIYGTFATASSDSSSDGG
RRRSRKRRKGDLISKADLSKPVQFVSTGTVMPSQEVKRDPQEEGDRSAGVPNSGQGLGYG
LGFQSNRKESVGDEDDEDQDNFLPTAFGRRIKEGAQRREKEKESERGKSKLAKKSSGRRD
ASGASEMGKFEAHTKGIGLKLMKMMGYKEGSGLGKNEQGIVAPVEAKLRPKNMGMGFNDY
KEAKLPVLDEAPKEKMATPVAAGPSKEKRWLKQKKGRAKAEILTADELLAKKQEQGIEVQ
KVLDMRGPQVKVLTSLENLNMETEMKENDVPMPELQYNVKLIVDSTEVDIQKLDQQLRRE
REKVVSLQEEKEKIMKDEMRQRKQLHVMETIALVLEKVKEDSLSGVLTLDSLLTTFKDLK
EMFRDDYKLCNISCIACSFAYPLLLRVFQGWEPLQNPLHGMNLISSWRDLLQGDQPYDFS
ENPFSTSSYSQLISEVILPAVRISGTNTWQARDPEPMLRFLEIWEKLLPPSVLQSILENV
VMPKLTTAVDSWDPRRETVPIHVWVHPWLPLLGQRLEMLYHTIRYKLGSVLHAWHASDAS
AYAILSPWKDVFDAASWEHLMVRYIVPKLRIALQEFQVNPANQKLDQFNWVMMWASAIPI
HHMVHMLEVDFFSKWQQVLYHWLCSRPNFNEVMQWYMGWKGLFPAELLANERIRVLLSSG
LDMMNQAVEGMEVVQPGARENVSYLRATEKRQLEAQQQAPAYSSVHVNGVGGVHEMSFKE
SIEAYAMEQGLLFIPKVGRYYNGLPVYGFGNISICIDSVKKLLYAQVHDGHERWSAVSLT
QLLEMHQNTSRH
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgattacgagggctcggagcgattcgggatggagaacgactatgagggcggc
gagtggattggcggcgagttctactaccgcagcaagaaggagcgctccgtccagacacgc
gaggacgccatctacggcacctttgccaccgcgtccagcgattctagctccgacggagga
aggcgccgctcgcggaagcgcaggaagggagacctcatctctaaggccgacctctccaag
cctgtccagtttgtctccactggcaccgtcatgcccagccaggaagtcaaacgggatccc
caggaagaaggggatcgatctgctggcgttcccaattctggccaggggttgggatatggg
ctagggtttcaatccaacagaaaggagagcgtgggggatgaggatgatgaggaccaggat
aatttcctcccaacggcctttgggaggaggattaaagaaggcgcccagcgccgtgagaag
gagaaggagtctgagagagggaaatcgaagttggccaagaagtcttctgggagaagagat
gcatctggcgccagtgagatggggaagtttgaggcacacaccaagggaattggtttgaag
ctgatgaagatgatgggatacaaggaagggtctggattggggaagaatgaacaaggcata
gtcgccccggtagaagctaaactccgtccaaagaacatgggcatggggttcaacgactac
aaggaggctaaattgcctgttttggatgaagcaccaaaggaaaaaatggctactccagtg
gcagcaggaccttcaaaggaaaagaggtggttaaagcagaagaaaggaagagccaaagct
gagattttgacggcagatgagttgctggctaaaaagcaggaacaaggtattgaggttcag
aaggttcttgatatgaggggaccacaagttaaggttttgactagtctggagaatttgaac
atggagactgagatgaaagagaatgacgtgcccatgcccgagctccagtacaatgttaaa
ctaattgtggattctactgaggttgacatacaaaagctagaccagcaattgagaagggag
agggagaaggtggtgagcttacaggaggaaaaggaaaagattatgaaagatgagatgagg
cagaggaagcaacttcatgttatggagacaattgcattagtcttagaaaaggtcaaggag
gacagcttatcaggggtgttgacacttgattctctactgaccactttcaaagatttaaaa
gagatgttcagagatgactacaagctctgcaatatttcctgtattgcttgctcatttgca
tatcctttgcttctccgggtgtttcaaggatgggaaccattgcagaatccattgcatggc
atgaatcttatatcttcttggagagatttgttgcaaggagatcagccttatgatttttca
gaaaaccctttttccacttcttcttattcacagcttatcagtgaagttattcttcctgct
gtgaggatatctgggactaacacttggcaggctagggatcctgaaccaatgcttcggttt
ctggaaatatgggagaagttactgccaccatccgttttgcagtcaattctagaaaatgtg
gttatgcctaagctaacgacggctgttgattcatgggatccacgacgagagactgtccca
attcatgtttgggttcacccatggcttccattgctagggcagagattggagatgttgtat
catacgatccgttataagctaggtagtgtcctccatgcttggcatgcaagtgatgcctca
gcatatgccatactttctccatggaaggatgtgtttgatgcagctagttgggagcatctg
atggtacgctatattgttcctaagttgagaatcgctcttcaagagttccaggtgaatcca
gctaatcagaagttagaccagttcaattgggtgatgatgtgggcatctgcaatcccaatc
caccatatggttcacatgctggaggttgattttttcagcaagtggcagcaagttttatac
cattggttgtgctcacgtcctaatttcaatgaggttatgcagtggtacatgggctggaag
ggtctcttccctgcagaattacttgccaatgagaggattcgagtgcttctaagttcgggt
ttggatatgatgaaccaggctgtagaaggcatggaagtggttcaacctggtgctagagag
aacgtcagctatctgagagctacagaaaagagacagttagaagcacagcaacaggctcca
gcttattcctcagtccatgtcaatggtgttggtggtgttcatgaaatgagcttcaaggaa
tccattgaagcttatgcaatggagcaaggcttgctgttcataccaaaagtcggtagatat
tacaatggtcttccagtgtatggatttggtaacataagcatttgcatagattcagttaag
aaactgctatatgcccaagtccatgatggccatgaacgctggagtgctgtgtcactcaca
cagttactggagatgcaccagaacacctcacgacattga
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