Zingiber officinale (ginger): 122024738
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Entry
122024738 CDS
T08725
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122024738
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122024738
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
DUF4523
Motif
Other DBs
NCBI-GeneID:
122024738
NCBI-ProteinID:
XP_042439352
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Position
9B:complement(88237000..88250258)
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AA seq
446 aa
AA seq
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MASSSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGKIVNTKCNVGANRNQAFV
EFVDLNQAISMISYYASSSEPAQVRGKTVYIQYSNRQEIVNNKATGEVAGNVLLVTIEGV
EAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDTATASEARNALDGRSIPRYL
LPEHVTSCHLRITFSAHTDLNIKFQSHRSRDYTNPYLPVNPSAIEGTLQPTIGPDGKIKE
PESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDMTTAAVAK
EALEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTITDTGILSNQASSVPAASASW
QTNPQVGMQAAAPVGLGQLPAFASPGGAFQGQPFIPPGAPAPYPTSSALPTTSAAYLQAS
QQVAKYGMHPRPAGGAPYVGQPPRYF
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcgtcggggcagccgcagtttcggtatacgcagacgccgtccaaagtgctt
cacctccggaatcttccctgggaatgtacggaggaggagctgatcgaactctgcaagccg
ttcggtaaaatcgtcaacactaaatgtaacgtgggggccaaccgcaatcaggcttttgtt
gaatttgtggaccttaatcaggctatctctatgatttcgtactatgcttcctcatctgag
cctgcacaagttcgtggcaaaacagtttacatccaatattccaacagacaagaaattgtg
aataataaggccaccggagaggttgccggcaatgttttgcttgttaccatagaaggagtt
gaagctggtgatgtcagtattgatgttattcatttggtcttttctgcttttggttttgtc
cacaaaattgctacatttgagaaggcagctggttttcaggctttaattcagtatactgac
acagcaactgcttcagaagctagaaatgcattggacgggagaagcattccaaggtacctg
cttccagagcatgttacatcttgccacctccgaattactttttcagctcatacagattta
aatatcaaatttcagtctcatcgcagcagggattacactaatccttaccttcctgttaat
ccttcagcaattgagggtactttacagcctacaattggtcctgatggaaaaataaaggag
cctgagagcaatgtgctacttgcttccatagagaatatgcaatatgctgtcacagttgat
gttcttcacacagtgttctcagcatttggaactgtccagaaaattgcaatatttgagaag
aatggtggaactcaagctttaatccaataccctgacatgaccacagcagcagttgccaaa
gaggctcttgaggggcattgcatttatgatggtggctattgtaagcttcatctctcatac
tctcgtcacactgacctcaatgtaaaggcatatagcgacaagagcagagattacacgatt
actgacactggaatcctctcaaatcaagcttcatctgtgccggctgcttccgctagttgg
caaacaaaccctcaagttggcatgcaagcagcagctccagtggggctgggacagttgcct
gcttttgcatcacccggtggagcattccaaggccaacctttcatcccacctggtgcccct
gccccatatccgacttcatctgctctcccgacaacttctgctgcctatcttcaagcttca
cagcaggtagctaaatatggaatgcacccaaggcctgctggtggtgcaccgtacgtcgga
caacctcctaggtatttctag
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