Zingiber officinale (ginger): 122024787
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Entry
122024787 CDS
T08725
Name
(RefSeq) tRNA pseudouridine synthase Pus10-like isoform X1
KO
K07583
tRNA pseudouridine synthase 10 [EC:
5.4.99.25
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
122024787
Enzymes [BR:
zof01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
122024787
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122024787
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pus10_C
Pus10_N_euk
RsmI_C
Motif
Other DBs
NCBI-GeneID:
122024787
NCBI-ProteinID:
XP_042439421
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All DBs
Position
9B:complement(2472469..2480042)
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AA seq
557 aa
AA seq
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MATSEEMEDVREVLRLAARSLPPSDAVLDLLDIGVCARCIFRLFGVLGRAYSFPSITDAV
LKSFLEEPDNFHSNAGEIGCGANGATFVQFSNSSKETRNVQQYCSICLGILQFAHQDQEL
MKMSTNRVPVDDFTLAIAELVKKEDYHIDGFSIEVSMPPVIVANERAVRLYMKKKYESEE
WFSAKFLHEHLSVKDALRTSTTALLEKHLGDVSDSNSFRIRLTYSHPEASRRLQSSLANN
LSGKGAKTVMKNNVNKANDSYEGILRNSEQQTCNESDAAILRALEGMQDHVFYECFTVPP
DKTFKPCHLTTTCYRMPIYIGGRYLKFSRNVSQTCWMVDDERIGEASVEEIVGKNILSVC
RGDNYKFHAAGREDIDVRMLGSGRPFLIEIANSRRIPSKVDIGLISEKINNNDQNHVRVR
NLSLIGNEAWTLMREGEAEKQKQYAALVWISRSLTDGDMQNISSLKDLDIIQRTPIRVLH
RRSPLERKRIIHWMSIEKISSSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSVGSILGCR
AEILQLDVTDVKMDIFN
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgagcgaagagatggaagatgtgagagaggtcctaagactggccgcgcggtcg
cttcctccttcagacgctgtccttgatctcctagacattggggtatgtgctcgctgcatc
ttcagattgtttggggttcttgggcgtgcttattctttcccgtcaattactgatgctgta
ttgaagtctttccttgaagagccggataatttccatagcaatgctggagaaattggatgc
ggagcaaatggagctacatttgtgcaattttcaaattcttcaaaggaaacaagaaacgtt
caacaatactgtagcatttgtttggggattctacaatttgctcaccaagatcaggaactg
atgaaaatgtcaacaaatagagttcctgttgatgactttactctcgccattgctgaactt
gtgaagaaagaggattatcacattgatggcttttctattgaagtttcaatgccacctgta
atagtggctaatgagcgtgccgttaggctgtacatgaaaaagaaatatgaaagtgaagag
tggttttcagcaaagttcctacatgagcacttatctgtgaaagatgctttgaggacatca
acaactgctttacttgaaaaacatttgggtgatgtatctgatagcaactcatttcgtatt
cgtctaacatactcacatcctgaggcctcaagaaggcttcaaagttccttagcaaataat
ctttctggcaagggtgcgaaaacagtaatgaagaacaatgtgaataaagctaatgattca
tacgagggaattttgagaaattcagaacagcaaacttgtaatgagtcagatgctgctatt
ctgcgagctttagaagggatgcaggatcatgtattttatgagtgttttacagtacctcca
gataagaccttcaaaccttgtcatctaacaactacttgctataggatgccaatttacatt
ggcggtcgttacctgaagttctcacgaaatgtgagccagacctgctggatggttgatgac
gaacgaattggtgaagcatctgttgaggagatagttggaaagaatattctttctgtatgc
agaggtgacaattataaatttcatgctgctggaagagaagacattgatgtacggatgtta
ggatctggacgaccttttcttattgaaattgcaaattcacggcgcattccatccaaggtt
gacattgggctaatttctgaaaagataaacaacaatgatcagaatcatgtcagggtgaga
aatcttagtctgattggcaatgaggcatggacccttatgcgtgaaggagaggcagagaag
cagaagcaatatgctgccctagtctggatttctcgctcactaactgatggtgacatgcag
aacatttcatctttaaaagacttggacatcatacagaggaccccgatcagggtgcttcac
cgccgaagcccattagagcgcaagcgtatcatacattggatgtcgattgagaaaatttcc
agtagttcccagtattttctgctacatctttgtacacaggcaggaacttatataaaggaa
ttcgttcatggggatcttggacgaacacatcccagcgttggttccatcttaggatgcaga
gcagagatattgcagctggacgtcactgatgtgaaaatggacatatttaattga
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