Zingiber officinale (ginger): 122024999
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Entry
122024999 CDS
T08725
Name
(RefSeq) probable ubiquitin conjugation factor E4 isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122024999
04120 Ubiquitin mediated proteolysis
122024999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122024999
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122024999
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
U-box type E3
122024999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
MJ1010-like_2nd
Motif
Other DBs
NCBI-GeneID:
122024999
NCBI-ProteinID:
XP_042439686
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All DBs
Position
9B:86020775..86031387
Genome browser
AA seq
987 aa
AA seq
DB search
MAAKTQRSLQDIIDIILRKIFLVVLQQPSKNDPNIVFLTLTAAKILSEGRTLVLSCTMMD
RVLIDRLSGDFPSAEPPFRYLVGCYRRACDELKRVVLVKNASFRSEIVFAIKQARKLVIL
YCRLYVGNPNMFKTSGHVSGASYLMSMIFAKVSTHMDEFGDEFGDDTFDSPPGFINEFFR
DGDDGNLELVVQDLFEKLRQSVDGISPLGNFQQPMRALLWLIEYPNNAKILVNHPRWIPK
KTNLPIGEGRMIEIESILGAFLRVSALPDSKEFKSTPDVGQQCFSEASNRRSVDLSSLTT
IKKAMNILYDGLVAVFHKLLNNQDTQERVLEYLAEVIKKNSARSCMQVDPLSFASYGMLV
NLSSVMLRLCQPLLDGAAKWREQIDHRYLFHNTRLDFRQLATMHASSEEVSAWLEEENSS
KDTHELEAQEGTSSGTRKEYSLTCECFFITTRVLNLGLMKAISEFEHLFEKLRSYEEDLS
ILKAMREQGASPLLDANIKHLKKEIDILTQSKSCYEVQIFQDYTLLGQASTFYKLVIIWL
VDFVGGFKIPLPSTCPMKFASIPEHFVDDAMNFLEITFGVPEVSEGVVLDFLNFIIMFMA
NDTYVKNPCLRAKMVEVLNHWIKKKGATLFERHPLSLDYLVSNLLKVDVAHIQLSDKFTI
RKNIYELLEYLWNIPSRLNAWKQIAREEKGMYLNFLNLLINDSMYLLDECLNKNISQLKK
IKVEMANSAEWEQRSVEERVEIMRLFHSQENIVRSNMKLANGNVGMLAFTSEQIPAPFLL
PEMVERVAIVLNYFLLQLTGSQWRFLDIKDPEKYEFRPRQLLKQITKIYVHIARGDKEMN
VFPAAISKDGQSYNEKLLTSQLFKYVADNLWKIHENRNIIQEFVELGLKVKSAVYEALNE
ASNAEAILGEIPDEFLDPILHTLMRDPVILPSSRMSVDRPVIQSHLLNGNTQNDPFTRCH
LTQDMLIPNTELKQRIEDFIISQRKRK
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaaacccagcgatctctacaggatatcattgacatcatcctccggaagatc
tttctcgtcgtcctccaacaaccctccaagaatgaccctaatatcgtttttttaacgctc
acggcagccaagatcctcagtgaaggcagaactcttgtcctttcctgcactatgatggac
agggttctcatcgatcggctatctggtgatttcccctccgcagagcctcccttccgctat
ttagttggctgctaccgccgtgcctgtgatgagttgaaaagggttgtcttagtgaagaac
gcctcctttagatcggaaattgtgtttgcaatcaaacaagcgcggaaattagtcatcttg
tattgtaggttatatgtggggaatccaaatatgttcaagacctctgggcatgtttcaggg
gcgtcttatttgatgtcgatgatcttcgcaaaggtctcaacccatatggatgagtttgga
gatgagttcggagatgatactttcgacagccctccaggttttattaatgagttcttcagg
gatggcgatgatggcaatttggaacttgttgtgcaggatttgtttgaaaaactgaggcag
agtgtggacggaatatcaccattaggaaactttcagcagccgatgagagcactgctgtgg
ttaattgaataccctaacaatgccaaaattttggtgaatcacccaaggtggatacctaag
aagactaacttgccgattggtgaaggaaggatgattgagattgaaagcattttaggagcc
tttctccgtgttagtgcattgcctgattctaaggaatttaagagtacaccagatgtcgga
caacaatgtttctcagaagcgtctaatcgtcggtcggttgatttatcatcccttacaaca
attaagaaagctatgaatattttgtacgatggcctcgttgcggtgtttcacaaattactt
aataatcaagatacgcaagaaagagttttagaatatcttgcagaagttatcaagaaaaat
tcagcaaggtcgtgcatgcaggttgatccattatcatttgcaagttatggcatgcttgtg
aatcttagttcggtgatgcttcgcctttgtcaacctttgttagatggtgctgcaaaatgg
agagaacaaattgatcatagatatttatttcataatactcgtttagatttcagacaattg
gcaaccatgcacgcatcgtctgaagaagtctcggcatggttagaggaggaaaattcctca
aaggatactcatgagttggaggctcaagaaggcacgagtagtggtacaagaaaggagtat
tctttaacttgtgaatgcttctttataactacaagagtacttaacttgggattgatgaaa
gcaatatcggaatttgaacatctttttgagaaactgagaagttatgaagaagacctgtct
atcctcaaagccatgagggaacaaggagcttctccactactggatgcaaatataaaacat
ctgaagaaagaaattgatatattgacacaatccaagtcatgttatgaagttcaaattttt
caagattatacactgctaggacaggcatcgaccttctacaaattggttattatctggttg
gtggattttgttggtgggtttaaaatacctctgccatcaacatgccctatgaaatttgca
tctattccagaacattttgtcgatgatgctatgaactttctggagataacttttggagtg
ccagaggtttctgaaggggttgtcttggatttcttgaatttcataattatgttcatggcg
aacgatacttatgttaagaacccatgtctgagagctaaaatggttgaagtactaaatcat
tggataaaaaaaaaaggtgctactctttttgaaagacacccgttgtcccttgactattta
gttagcaatcttcttaaagttgatgtggcacatatacagttatctgataaattcactatt
cgtaaaaatatatatgaacttttagagtatttgtggaatattcctagccgtctcaatgca
tggaaacagattgctagggaggagaagggaatgtatctgaattttttgaatttgcttatc
aatgatagcatgtatcttcttgatgagtgcttaaacaaaaatatcagtcaactaaaaaaa
ataaaagtcgaaatggcaaattctgcagaatgggaacagagatctgtagaggagagggta
gagataatgagactttttcattcacaagaaaatattgtcagatctaatatgaagttggca
aatgggaatgttggtatgcttgcattcacatctgaacaaattcctgcacccttcctgctt
ccagaaatggttgaaagggtagctatcgtgctaaattattttctcttgcaacttactggt
tctcaatggaggtttctcgatataaaagatcctgaaaaatatgaatttagacccagacaa
ttgctaaaacaaattaccaagatttatgttcatattgcaagaggtgacaaagagatgaat
gtgttccctgctgcaatctcgaaggatggacagtcatacaatgagaagctgcttacatca
cagctatttaaatatgttgctgataatctctggaagattcatgaaaatcgtaacataatc
caggagtttgttgagcttggtctcaaagtaaaatcagcagtttatgaagcattgaatgaa
gcatcgaatgctgaggccattcttggagagataccagatgaatttcttgatccgattctg
catactttgatgagagatcctgtcattctaccttcatcaagaatgtcggtggaccggcca
gttatccaaagccacttgctgaatggcaatacccagaacgatccattcacccgttgtcat
ctgactcaagacatgctaataccaaacacagagctgaaacaaagaattgaagacttcatc
atatctcagaggaaacggaaatga
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