Zingiber officinale (ginger): 122025010
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Entry
122025010 CDS
T08725
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 1-like
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122025010
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122025010
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122025010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
PA
zf-RING_11
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-RING_4
Prok-RING_4
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
122025010
NCBI-ProteinID:
XP_042439702
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All DBs
Position
9B:2255411..2258663
Genome browser
AA seq
305 aa
AA seq
DB search
MTLHRRPNRGPTSSFPAAAAAATSFSPCSLLFLFCCFSSLLRSSEALVHLRSKPFSFTFL
DAPARFAVPVDGFGICGSLHVAEPLDACSGLRNNWTALGDGRGGDSRFVLISRGVCSFEE
KVRNAQGAGFGAAIIFDDQEKNSLYAMVGDSAGIHIHAVFVSKIAGDTLMKHARGEEGEC
CIGSSMDEATGTILVISFASLVFIIIVLAAFLLARNCQLLRHRIQNPPASMKQEAVELLP
CLTFRTAFLSSKRTAETCAICLEDYKDGESLRVLPCQHDFHLVCVDSWLTKWGTFCPVCK
HDMRS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgactcttcaccgtcgccctaaccgtggcccgacgtcctccttcccagccgccgccgcc
gccgccaccagtttctccccctgctccctcctattcctcttctgctgcttctcatccctc
ctccgatcctctgaagccctcgtccacctccgctccaagcccttctccttcaccttcctc
gacgcccctgcacgtttcgctgttccggtcgatggattcgggatctgcggctctctgcac
gttgcggaaccccttgacgcttgctctggtctcaggaataactggacggccctcggcgac
ggtaggggtggagattcgaggttcgttctgatctccaggggggtgtgcagcttcgaggag
aaggtcaggaacgcacagggtgctggatttggggctgccataatattcgatgaccaggag
aagaacagcttgtacgccatggttggagattcagctggcatacatatacatgcagttttt
gtttcaaagatcgcaggtgacactctgatgaagcatgcccgtggggaagaaggggaatgt
tgcataggatcctccatggatgaagctactggaaccatcctggttatatcttttgcatct
ctggtattcataataatagtacttgctgcatttttgttggctagaaactgtcagcttctt
cggcatcgaatacaaaacccacctgcaagcatgaaacaagaagcagtcgagctacttccc
tgcctcacatttagaactgcattcttaagtagcaaacgaacagccgagacctgtgctatt
tgccttgaagattacaaagatggagagtctctgagagttcttccttgtcaacacgacttc
catttggtgtgtgtggattcatggttaaccaagtggggaacattttgcccagtctgtaaa
catgatatgcgctcatga
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