Zingiber officinale (ginger): 122025016
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Entry
122025016 CDS
T08725
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122025016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122025016
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122025016
mRNA degradation factors
5'-3' decay
Lsm complex
122025016
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
122025016
NCBI-ProteinID:
XP_042439707
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All DBs
Position
9B:116805697..116812352
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AA seq
128 aa
AA seq
DB search
MSFAGPEDILLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANVVLEGACERVIVGDL
FCDIPLGLYVIRGENVVLIGELDSEREELPAHMICVSVPEIKRAQKAEREATDLKGSMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcgggaccagaagacatcttgctctccacttcccttgctagctatctggac
aaaaagcttcttgtgttattacgcgatgggcgaaagcttctaggcattcttcgttctttt
gaccaatttgccaatgtggttcttgaaggtgcatgcgagcgggtaattgtaggagattta
ttctgtgatattcctctgggtctctacgtgatccgtggggagaatgtcgttttaatagga
gaactggactcggagagggaggagcttccagcccatatgatctgtgtttcggttccagag
atcaaaagggcacaaaaagctgagagggaagccacagatctcaagggctctatgaggaag
agaatggagtttctcgatctcgactag
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