Zingiber officinale (ginger): 122025154
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Entry
122025154 CDS
T08725
Name
(RefSeq) fanconi-associated nuclease 1 homolog isoform X1
KO
K15363
fanconi-associated nuclease 1 [EC:3.1.21.-
3.1.4.1
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
122025154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122025154
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.1 phosphodiesterase I
122025154
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
Other FA pathway factors
122025154
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VRR_NUC
FAN1_TPR
FAN1_HTH
Motif
Other DBs
NCBI-GeneID:
122025154
NCBI-ProteinID:
XP_042439855
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Position
9B:complement(87993517..88003900)
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AA seq
607 aa
AA seq
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MIKYQNNFSLMIEEVISHHSHLFTIEEKTFIGYFTSLSDEGQRLFIRIYTRKGPWFRVSN
ISYSEIQDVQKAIAELQLAGFIYSFHSCDDSFTYNMKEVLDLLNVSEMRQIISSEVHKKG
INCSRRNDLVNILCSAYASGACPLLPKMILEQTGTCIRISSLADVFWRIQRLFFLNGDQD
LSEFLLVDLGIIKFPDYVCNVSHQIFEDRSDLTDYEEAIEVAQIVDESLEANNVEMVTRC
IDIADVRMCTSFTRKHDFTTDPPPHFYSCFSASFVYSKVLSLGVSFFEREHRYEDAIRIL
KGLLTRVTRDSRRGYWTLRLSVNLEHMNYFNESLSVAEEGILDPWVRAGSKMALQRRVLR
LGKPPRRWRVPDYADSVKRKIKEICITGRPLSNETASKNMYYGYDDELCGVEQLALQYYA
EEGGWSGIHSESGIWMTIYGLLMWDVIFSNVPDVFRSRFQTAPLDFDTDDFYTSREHLIE
CQLQKIEDGMAEEILICSWESHMGVACRGVNWERHSLPDLRAAVSCIGGCPLASLCRHLA
VDYRSWSSGMPDLLLWRFHGDSSRGEAKLVEVKGPSDRLSEQQRAWLLILMDCGFDAEVC
KVRPLSK
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgataaagtaccagaataacttttctttgatgattgaagaggttataagccatcattca
cacctttttactatcgaagaaaaaacatttatagggtattttacatcactatcagatgaa
ggtcaaaggctttttatacgaatatacactcgtaaaggaccatggttcagggtaagcaac
atctcctactctgagattcaagatgtacaaaaagccattgcggaactacagttggcaggt
ttcatttactcatttcattcatgtgatgattcgtttacatacaacatgaaagaggttctt
gacttgctaaatgtttctgaaatgcgtcaaatcataagttcagaagttcataagaaagga
atcaactgcagtcgccgaaacgaccttgtaaatatcctctgctctgcttatgccagtgga
gcatgcccactgctaccaaagatgattctcgaacaaacaggaacctgcataagaatttct
tctttagctgatgttttctggcgcattcagaggctctttttccttaatggtgatcaggac
ctttcagaatttcttttagttgatcttgggattatcaaatttccagattatgtctgcaat
gtttctcaccaaatttttgaagatcgttctgatcttactgattatgaagaggccattgaa
gtggctcagatagtggatgaatctcttgaagcaaataatgtggaaatggtgacaagatgc
attgacatagctgatgtccgtatgtgcactagcttcacaagaaaacatgacttcaccact
gatcctccgccgcatttttattcatgtttttcagcatcatttgtatactcaaaggtgcta
tcattgggtgtttccttctttgagcgcgagcataggtatgaagatgcaataaggattctg
aagggactcctcacaagagtcactcgtgacagtaggagaggatactggaccttgaggctt
tctgttaatttggaacacatgaattatttcaatgagagtctctctgtagctgaagaagga
attttagatccctgggttcgtgctggttcaaaaatggcattgcaaaggcgcgttctccgt
ttaggcaaaccaccgcgccggtggagggtacctgattatgcagattctgttaagcgaaaa
atcaaagagatttgcataactggaagacctttgtctaatgagacagcatccaagaatatg
tattatgggtatgatgatgaactgtgtggagtcgagcagctggccttgcaatactatgca
gaagaaggtggatggagcggcatccactcggaaagcgggatctggatgacgatctatggc
cttctcatgtgggacgttatattcagcaatgtcccggacgttttcagatcaagatttcag
actgctccgctagatttcgatacggacgacttttacacgagcagggagcatctcatagaa
tgccagttgcagaagattgaagatggcatggctgaggagattttgatctgctcctgggag
tcccacatgggggtggcttgccgcggcgtgaactgggaacggcattcacttccagatctg
cgagctgctgtctcatgcatcggaggctgcccgttggcttcgctctgccgacatctggct
gtcgactaccggagttggtccagcggcatgccggatctgttgctgtggcgcttccatgga
gatagcagtcgaggcgaagcaaagcttgtagaagtaaaaggcccgagcgataggctttcg
gagcagcaacgagcatggctgctcatcctcatggattgtgggtttgatgctgaagtgtgc
aaagtcaggccattatccaaatga
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