Zingiber officinale (ginger): 122025319
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Entry
122025319 CDS
T08725
Name
(RefSeq) probable pectate lyase 8 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122025319
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122025319
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122025319
NCBI-ProteinID:
XP_042440037
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Position
9B:55377108..55380271
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AA seq
467 aa
AA seq
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MALGSMGRPALLLLCLVLLIVVGGVSASRAGAGAAASSASPANESASMGKRAAAGAVAST
GSSASPANESASMGKSAAEHQTVAAVVDDPELIAAEVHMVTQNSTARRNLGYLSCSTGNP
IDDCWRCDPDWHENRKRLADCGIGFGRNALGGRDGEIYVVTDHGDDDPVNPRPGTLRYAV
IQEEPLWIVFKRDMVITLSEELIMNSFKTIDGRGANVHIANGACITIQFVTNIIIHGLHI
HDCKPTGNAMVRSSPSHYGWRTMADGDGVSIFGASHIWVDHNSLSNCADGLIDAIMGSTA
ITISNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNND
YTHWEMYAIGGSADPTINSQANRYLAPTNAFAKEVTKRVDTDSSVWKSWNWRSEGDLLLN
GAYFTPSGAGASASYAKASSLGAKSTSMIDSITVDAGALRCRKGVQC
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgggatcgatggggcgtccggcattgctgcttctctgcctcgtactgcttata
gtagtcggtggcgtctccgcctccagggcgggagctggggcggcggcctcaagtgcttct
ccggctaacgagtcggcttccatggggaagagggcggcagctggggcggtggcctcgacg
ggctcgagtgcttctccggctaacgagtcggcttccatggggaagagtgccgccgagcat
caaacggtggcggccgtggtcgacgatccggaactgatcgcagctgaggttcacatggtg
acacagaacagcacggctcgccgcaacctcggctacttgtcgtgctcgactggcaatccc
atcgacgactgctggcgctgcgacccggattggcatgagaaccgcaagcgcttggcagac
tgcggcattggcttcggccgcaacgcgctcggcggccgcgacggtgaaatctacgtggtg
accgaccacggggacgatgatcccgtgaacccgcggccgggcacgctccgctacgcggtc
atccaagaggagcccctctggatcgtattcaagcgcgacatggtcatcaccctctccgag
gagctgatcatgaacagcttcaagaccattgacggccgcggcgccaacgtgcacatcgcc
aacggcgcctgcatcaccatccaattcgtcaccaacatcatcattcacggcctccacatt
cacgactgcaagcccaccggcaacgccatggtccgtagctccccctcccactacggctgg
cgcaccatggccgacggcgacggcgtctccatattcggtgccagccacatttgggtcgac
cacaactctctttccaactgcgccgacggcctcatcgacgccattatgggttccaccgcc
atcaccatttccaataattacttcacccaccacaacgaggtgatgctgctgggccacagt
gattcttacgtgaaggacaaggccatgcaggtcaccatcgcctacaaccacttcggagaa
ggtttaattcagagaatgccaaggtgcaggcacggctacttccatgtggtgaacaatgac
tacacgcactgggagatgtacgccattggtggaagtgctgacccaaccattaacagccaa
gcaaacaggtatcttgcccctaccaacgccttcgctaaggaggtaaccaagagagtcgac
acagattcaagcgtgtggaagagttggaactggagatcagaaggtgacctgcttctgaac
ggggcttacttcaccccctccggagctggagcatctgctagctacgccaaggcttctagc
ctcggagccaaatccacgtccatgattgactccatcactgtcgatgcaggtgcgctgcgc
tgtcgcaagggtgttcaatgctaa
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